miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 4872 0.73 0.72592
Target:  5'- cGAGCGGCAAUCCaGACGagcaGACCAaGGa -3'
miRNA:   3'- cUUCGUCGUUGGGcUUGCg---CUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 16134 0.73 0.72592
Target:  5'- -cGGCAGCAccauGCCgGAgcuGCGCGACCAa- -3'
miRNA:   3'- cuUCGUCGU----UGGgCU---UGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 68422 0.73 0.735536
Target:  5'- uGAGCGGCGGaCUGGACGUGACCAc- -3'
miRNA:   3'- cUUCGUCGUUgGGCUUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 168627 0.73 0.745067
Target:  5'- --cGCGGCuGCCCGGGuCGCGcACCAGc -3'
miRNA:   3'- cuuCGUCGuUGGGCUU-GCGC-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 73764 0.73 0.754503
Target:  5'- -cGGCAGCGGCgCCGccAGCgGCGACCAuGGu -3'
miRNA:   3'- cuUCGUCGUUG-GGC--UUG-CGCUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 38075 0.73 0.754503
Target:  5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3'
miRNA:   3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5'
30185 5' -54.7 NC_006273.1 + 232968 0.73 0.754503
Target:  5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3'
miRNA:   3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5'
30185 5' -54.7 NC_006273.1 + 140813 0.72 0.782157
Target:  5'- gGGAGCAGCGAgggauCCCGGGC-CGGagcCCGGGg -3'
miRNA:   3'- -CUUCGUCGUU-----GGGCUUGcGCU---GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 61416 0.72 0.782157
Target:  5'- uGAGCAGCGcGCCCGGcUGCGccucgaacucuACCAGGc -3'
miRNA:   3'- cUUCGUCGU-UGGGCUuGCGC-----------UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 114884 0.72 0.799962
Target:  5'- --uGUAcuGCAGCCCGcuAGCGCGGCCGGc -3'
miRNA:   3'- cuuCGU--CGUUGGGC--UUGCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 98683 0.72 0.799962
Target:  5'- -uAGUAGCAACCgCGGcgGCgGCGACCGGc -3'
miRNA:   3'- cuUCGUCGUUGG-GCU--UG-CGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 93011 0.72 0.808651
Target:  5'- uGAGCGGCug-CgGAACGCGGCCcGGg -3'
miRNA:   3'- cUUCGUCGuugGgCUUGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 11004 0.72 0.808651
Target:  5'- --uGUGGCAuCCCcauGAGCGCGGCCAGu -3'
miRNA:   3'- cuuCGUCGUuGGG---CUUGCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 168305 0.71 0.817187
Target:  5'- --cGCGGCGACUCGucGCGCG-CCAGu -3'
miRNA:   3'- cuuCGUCGUUGGGCu-UGCGCuGGUCc -5'
30185 5' -54.7 NC_006273.1 + 55700 0.71 0.825561
Target:  5'- cGAAGCcGCGGaaaCCGGAcCGCGAcaCCAGGu -3'
miRNA:   3'- -CUUCGuCGUUg--GGCUU-GCGCU--GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 135208 0.71 0.825561
Target:  5'- --uGCAGCcACCCGGACGUGAacguCguGGa -3'
miRNA:   3'- cuuCGUCGuUGGGCUUGCGCU----GguCC- -5'
30185 5' -54.7 NC_006273.1 + 185422 0.71 0.833768
Target:  5'- gGAAuGCGGC-ACCCGGcugcACGUGGCCuGGc -3'
miRNA:   3'- -CUU-CGUCGuUGGGCU----UGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 39856 0.71 0.833768
Target:  5'- aAGGCAGgAACCCGGaggaacACGCGcaaCAGGg -3'
miRNA:   3'- cUUCGUCgUUGGGCU------UGCGCug-GUCC- -5'
30185 5' -54.7 NC_006273.1 + 234748 0.71 0.833768
Target:  5'- aAGGCAGgAACCCGGaggaacACGCGcaaCAGGg -3'
miRNA:   3'- cUUCGUCgUUGGGCU------UGCGCug-GUCC- -5'
30185 5' -54.7 NC_006273.1 + 22298 0.71 0.841798
Target:  5'- -cGGCAGCGguACCCGA-CGCGGCagcGGc -3'
miRNA:   3'- cuUCGUCGU--UGGGCUuGCGCUGgu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.