miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 80384 0.66 0.976294
Target:  5'- gGGAGCGGCGGCCguggCGGcgGCaGCGGCgCAGa -3'
miRNA:   3'- -CUUCGUCGUUGG----GCU--UG-CGCUG-GUCc -5'
30185 5' -54.7 NC_006273.1 + 30023 0.66 0.976294
Target:  5'- --uGCAGCAcuagguuccaGCCCG---GCGGCCAGa -3'
miRNA:   3'- cuuCGUCGU----------UGGGCuugCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 113258 0.66 0.976294
Target:  5'- aGGAGCuGguGCaaGAGCGUcugucgGGCCAGGu -3'
miRNA:   3'- -CUUCGuCguUGggCUUGCG------CUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 133498 0.66 0.976294
Target:  5'- -uGGCGGCGGCCCGGGCuuuguuagcCGACUAc- -3'
miRNA:   3'- cuUCGUCGUUGGGCUUGc--------GCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 88122 0.66 0.976294
Target:  5'- --cGCGGCaAACuuGuccaucagcGACGCGGCCAGc -3'
miRNA:   3'- cuuCGUCG-UUGggC---------UUGCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 129513 0.66 0.976294
Target:  5'- aAAGCAGCGcgACCCGGAgaaUGGCCGGc -3'
miRNA:   3'- cUUCGUCGU--UGGGCUUgc-GCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 45865 0.66 0.975562
Target:  5'- --uGuCGGCGGCCCugGAACucucacacagcgcgGCGGCCGGGc -3'
miRNA:   3'- cuuC-GUCGUUGGG--CUUG--------------CGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 40238 0.66 0.974813
Target:  5'- -cGGCAG-AACCCGGuUGCGGCCccguaccgcucuucuGGGg -3'
miRNA:   3'- cuUCGUCgUUGGGCUuGCGCUGG---------------UCC- -5'
30185 5' -54.7 NC_006273.1 + 173611 0.66 0.973788
Target:  5'- aAAGUGGUAGCCCGAGCuCGGCa--- -3'
miRNA:   3'- cUUCGUCGUUGGGCUUGcGCUGgucc -5'
30185 5' -54.7 NC_006273.1 + 38570 0.66 0.973788
Target:  5'- cGGGCAGCAccgcGCCC-AGCGCcaGCCAGc -3'
miRNA:   3'- cUUCGUCGU----UGGGcUUGCGc-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 213135 0.66 0.973788
Target:  5'- uGGAGCGGCA---CGAugGUGACCGucGGc -3'
miRNA:   3'- -CUUCGUCGUuggGCUugCGCUGGU--CC- -5'
30185 5' -54.7 NC_006273.1 + 147355 0.66 0.973788
Target:  5'- ---cCAGCGAUuaaCGGACGCcGCCGGGg -3'
miRNA:   3'- cuucGUCGUUGg--GCUUGCGcUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 233463 0.66 0.973788
Target:  5'- cGGGCAGCAccgcGCCC-AGCGCcaGCCAGc -3'
miRNA:   3'- cUUCGUCGU----UGGGcUUGCGc-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 171138 0.66 0.973788
Target:  5'- --cGCcGCAacGCCCGugccCGCGgGCCAGGu -3'
miRNA:   3'- cuuCGuCGU--UGGGCuu--GCGC-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 68780 0.66 0.973788
Target:  5'- uGAAGCGGCGGCggCGAugGCGggGCUGGu -3'
miRNA:   3'- -CUUCGUCGUUGg-GCUugCGC--UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 222838 0.66 0.973527
Target:  5'- aGAGCAGCAa--CGGACGCGucaucucGCCuGGa -3'
miRNA:   3'- cUUCGUCGUuggGCUUGCGC-------UGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 157295 0.66 0.971096
Target:  5'- aGAAaCAGCGGCggCGGugGUGACUGGGg -3'
miRNA:   3'- -CUUcGUCGUUGg-GCUugCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 173805 0.66 0.971096
Target:  5'- --cGCGGUGGCCaaaCGGccGCGCGACCcGGc -3'
miRNA:   3'- cuuCGUCGUUGG---GCU--UGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 103517 0.66 0.971096
Target:  5'- -cAGguGCGugCCGucGAUGCGGCCGc- -3'
miRNA:   3'- cuUCguCGUugGGC--UUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 154641 0.66 0.971096
Target:  5'- -cGGCGGCAACgaCGAGacgGCGuuuuuCCAGGa -3'
miRNA:   3'- cuUCGUCGUUGg-GCUUg--CGCu----GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.