miRNA display CGI


Results 41 - 60 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 15438 0.66 0.971096
Target:  5'- ----gAGCGACgCGAGCGCGAgCGGc -3'
miRNA:   3'- cuucgUCGUUGgGCUUGCGCUgGUCc -5'
30185 5' -54.7 NC_006273.1 + 56602 0.66 0.971096
Target:  5'- ---uCAGCGACguuaCGAAUGUGACCAGc -3'
miRNA:   3'- cuucGUCGUUGg---GCUUGCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 39221 0.66 0.971096
Target:  5'- -cGGCAGCAgcguGCCCGcgucgcGCuGCGACCAc- -3'
miRNA:   3'- cuUCGUCGU----UGGGCu-----UG-CGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 173805 0.66 0.971096
Target:  5'- --cGCGGUGGCCaaaCGGccGCGCGACCcGGc -3'
miRNA:   3'- cuuCGUCGUUGG---GCU--UGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 209432 0.66 0.971096
Target:  5'- -cAGCGGCGuCUCGuAGCGUacaGCCAGGg -3'
miRNA:   3'- cuUCGUCGUuGGGC-UUGCGc--UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 154641 0.66 0.971096
Target:  5'- -cGGCGGCAACgaCGAGacgGCGuuuuuCCAGGa -3'
miRNA:   3'- cuUCGUCGUUGg-GCUUg--CGCu----GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 103517 0.66 0.971096
Target:  5'- -cAGguGCGugCCGucGAUGCGGCCGc- -3'
miRNA:   3'- cuUCguCGUugGGC--UUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 234114 0.66 0.971096
Target:  5'- -cGGCAGCAgcguGCCCGcgucgcGCuGCGACCAc- -3'
miRNA:   3'- cuUCGUCGU----UGGGCu-----UG-CGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 94104 0.66 0.971096
Target:  5'- uGGGCGGCcgcACCUaggGAGCGCGagccccguGCCGGGc -3'
miRNA:   3'- cUUCGUCGu--UGGG---CUUGCGC--------UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 44005 0.66 0.970816
Target:  5'- cGAGGCAGaacaucuCAACCCaGACGacaaGcGCCAGGa -3'
miRNA:   3'- -CUUCGUC-------GUUGGGcUUGCg---C-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 90786 0.66 0.970816
Target:  5'- gGAAGCgcccAGCAGCCCcGACGUggggucgauagcaGACCgAGGc -3'
miRNA:   3'- -CUUCG----UCGUUGGGcUUGCG-------------CUGG-UCC- -5'
30185 5' -54.7 NC_006273.1 + 156764 0.67 0.96821
Target:  5'- uGAGCAGCuagGCuuGGuggugcucCGCGugCGGGg -3'
miRNA:   3'- cUUCGUCGu--UGggCUu-------GCGCugGUCC- -5'
30185 5' -54.7 NC_006273.1 + 171632 0.67 0.96821
Target:  5'- aGAGGC-GC-GCCCGGccACGCG-CCAGc -3'
miRNA:   3'- -CUUCGuCGuUGGGCU--UGCGCuGGUCc -5'
30185 5' -54.7 NC_006273.1 + 123609 0.67 0.96821
Target:  5'- cGAGCgcaggauauGGCAGCCUGG--GCGugCGGGa -3'
miRNA:   3'- cUUCG---------UCGUUGGGCUugCGCugGUCC- -5'
30185 5' -54.7 NC_006273.1 + 80029 0.67 0.96821
Target:  5'- cGAGCGGCAACgUGGcgaaGCGACCGc- -3'
miRNA:   3'- cUUCGUCGUUGgGCUug--CGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 204388 0.67 0.96821
Target:  5'- --uGCAGCAcgaauuugagauACUCGAcgugcugcgGCGCGACCAcgcuGGg -3'
miRNA:   3'- cuuCGUCGU------------UGGGCU---------UGCGCUGGU----CC- -5'
30185 5' -54.7 NC_006273.1 + 52487 0.67 0.96821
Target:  5'- -cAGCAGCAcacacgGCCCuAACGCcACCGGc -3'
miRNA:   3'- cuUCGUCGU------UGGGcUUGCGcUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 40494 0.67 0.96821
Target:  5'- cGAGGCGGCccGGCugcugCCGGACagGCGACCcGGc -3'
miRNA:   3'- -CUUCGUCG--UUG-----GGCUUG--CGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 213553 0.67 0.96821
Target:  5'- aGGGCAGCAGaCCCGAG-GUG-CgGGGa -3'
miRNA:   3'- cUUCGUCGUU-GGGCUUgCGCuGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 32768 0.67 0.96821
Target:  5'- -cGGCAGCGAgUCGGcgGCGCGcACCAc- -3'
miRNA:   3'- cuUCGUCGUUgGGCU--UGCGC-UGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.