miRNA display CGI


Results 1 - 20 of 205 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 16 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 938 0.67 0.958338
Target:  5'- cGggGCGGCGACggcguuguuuUCGGGCGUG-CUGGGc -3'
miRNA:   3'- -CuuCGUCGUUG----------GGCUUGCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 1438 0.67 0.965125
Target:  5'- --cGCGGcCGACCCGAcgguGgGCGACaAGGc -3'
miRNA:   3'- cuuCGUC-GUUGGGCU----UgCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 1950 0.67 0.961836
Target:  5'- --cGCGGUGGCUgGGuuGCGCGGCgGGGc -3'
miRNA:   3'- cuuCGUCGUUGGgCU--UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 2428 0.68 0.927688
Target:  5'- -cGGCGGCugcuGCCCGAGCuggaccGCGAgCAGu -3'
miRNA:   3'- cuUCGUCGu---UGGGCUUG------CGCUgGUCc -5'
30185 5' -54.7 NC_006273.1 + 3676 0.75 0.646915
Target:  5'- -cAGCGGCAugCCG-ACGCcGACCcGGGg -3'
miRNA:   3'- cuUCGUCGUugGGCuUGCG-CUGG-UCC- -5'
30185 5' -54.7 NC_006273.1 + 4872 0.73 0.72592
Target:  5'- cGAGCGGCAAUCCaGACGagcaGACCAaGGa -3'
miRNA:   3'- cUUCGUCGUUGGGcUUGCg---CUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 11004 0.72 0.808651
Target:  5'- --uGUGGCAuCCCcauGAGCGCGGCCAGu -3'
miRNA:   3'- cuuCGUCGUuGGG---CUUGCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 15438 0.66 0.971096
Target:  5'- ----gAGCGACgCGAGCGCGAgCGGc -3'
miRNA:   3'- cuucgUCGUUGgGCUUGCGCUgGUCc -5'
30185 5' -54.7 NC_006273.1 + 15614 0.66 0.97862
Target:  5'- gGAAGCAGC----CGAGCGCGAggccgcuggucaUCAGGa -3'
miRNA:   3'- -CUUCGUCGuuggGCUUGCGCU------------GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 16134 0.73 0.72592
Target:  5'- -cGGCAGCAccauGCCgGAgcuGCGCGACCAa- -3'
miRNA:   3'- cuUCGUCGU----UGGgCU---UGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 20355 0.67 0.965125
Target:  5'- gGAAGCGGUcccAACaCCGGcggacCGCGACCcGGc -3'
miRNA:   3'- -CUUCGUCG---UUG-GGCUu----GCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 22298 0.71 0.841798
Target:  5'- -cGGCAGCGguACCCGA-CGCGGCagcGGc -3'
miRNA:   3'- cuUCGUCGU--UGGGCUuGCGCUGgu-CC- -5'
30185 5' -54.7 NC_006273.1 + 28914 0.69 0.922403
Target:  5'- cGAGGCAGCggUCUuuGgGCcaGACCAGGc -3'
miRNA:   3'- -CUUCGUCGuuGGGcuUgCG--CUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 29770 0.66 0.980772
Target:  5'- -cGGCGcGCAGCCCGAcGCGCGcaaacuccAUgAGGu -3'
miRNA:   3'- cuUCGU-CGUUGGGCU-UGCGC--------UGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 30023 0.66 0.976294
Target:  5'- --uGCAGCAcuagguuccaGCCCG---GCGGCCAGa -3'
miRNA:   3'- cuuCGUCGU----------UGGGCuugCGCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 31397 0.69 0.898987
Target:  5'- --cGCGGCAcGCCCGAAucgcCGCGGCUcaccgAGGu -3'
miRNA:   3'- cuuCGUCGU-UGGGCUU----GCGCUGG-----UCC- -5'
30185 5' -54.7 NC_006273.1 + 32768 0.67 0.96821
Target:  5'- -cGGCAGCGAgUCGGcgGCGCGcACCAc- -3'
miRNA:   3'- cuUCGUCGUUgGGCU--UGCGC-UGGUcc -5'
30185 5' -54.7 NC_006273.1 + 33951 0.67 0.96821
Target:  5'- uGAGGUGGCGGaucgCCGGcaggugaaACGCGcCCAGGu -3'
miRNA:   3'- -CUUCGUCGUUg---GGCU--------UGCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 34536 0.68 0.937099
Target:  5'- cGGGCGGCAagggcacGCCuCGaAGCGCGGCCcAGa -3'
miRNA:   3'- cUUCGUCGU-------UGG-GC-UUGCGCUGG-UCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.