miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 36709 0.68 0.927688
Target:  5'- uAGGUAGCGGCCgCGAgcggaggcGCGCGAgCGGcGg -3'
miRNA:   3'- cUUCGUCGUUGG-GCU--------UGCGCUgGUC-C- -5'
30185 5' -54.7 NC_006273.1 + 37200 0.67 0.954626
Target:  5'- cAAGCAGCGuuugcgacgcGgCCGAcGCGCGugcCCAGGc -3'
miRNA:   3'- cUUCGUCGU----------UgGGCU-UGCGCu--GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 37287 0.68 0.932744
Target:  5'- --cGCcgAGCAGCCCuuGCGaCGGCCGGa -3'
miRNA:   3'- cuuCG--UCGUUGGGcuUGC-GCUGGUCc -5'
30185 5' -54.7 NC_006273.1 + 38029 0.67 0.965125
Target:  5'- --uGCAGCGcguCCC-AGCGCGGCCGc- -3'
miRNA:   3'- cuuCGUCGUu--GGGcUUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 38075 0.73 0.754503
Target:  5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3'
miRNA:   3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5'
30185 5' -54.7 NC_006273.1 + 38202 0.69 0.922403
Target:  5'- cGGGCAGU-ACCCGAACacgGCGcCCAGc -3'
miRNA:   3'- cUUCGUCGuUGGGCUUG---CGCuGGUCc -5'
30185 5' -54.7 NC_006273.1 + 38465 0.69 0.898987
Target:  5'- aGAGGUAGCGGCUgCGggUccggaGACCAGGa -3'
miRNA:   3'- -CUUCGUCGUUGG-GCuuGcg---CUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 38570 0.66 0.973788
Target:  5'- cGGGCAGCAccgcGCCC-AGCGCcaGCCAGc -3'
miRNA:   3'- cUUCGUCGU----UGGGcUUGCGc-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 38792 0.66 0.978395
Target:  5'- cGAGCAGUAcaacacgGCCuCGAACGUGACgGa- -3'
miRNA:   3'- cUUCGUCGU-------UGG-GCUUGCGCUGgUcc -5'
30185 5' -54.7 NC_006273.1 + 38839 0.69 0.913471
Target:  5'- uGAGGCAGCAGCgUCGcGCGCGgggugcccacgcccaGCCGGu -3'
miRNA:   3'- -CUUCGUCGUUG-GGCuUGCGC---------------UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 39221 0.66 0.971096
Target:  5'- -cGGCAGCAgcguGCCCGcgucgcGCuGCGACCAc- -3'
miRNA:   3'- cuUCGUCGU----UGGGCu-----UG-CGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 39367 0.7 0.864771
Target:  5'- cGAGGCGGCGcuACCCG-GCGagGACgAGGc -3'
miRNA:   3'- -CUUCGUCGU--UGGGCuUGCg-CUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 39856 0.71 0.833768
Target:  5'- aAGGCAGgAACCCGGaggaacACGCGcaaCAGGg -3'
miRNA:   3'- cUUCGUCgUUGGGCU------UGCGCug-GUCC- -5'
30185 5' -54.7 NC_006273.1 + 40238 0.66 0.974813
Target:  5'- -cGGCAG-AACCCGGuUGCGGCCccguaccgcucuucuGGGg -3'
miRNA:   3'- cuUCGUCgUUGGGCUuGCGCUGG---------------UCC- -5'
30185 5' -54.7 NC_006273.1 + 40494 0.67 0.96821
Target:  5'- cGAGGCGGCccGGCugcugCCGGACagGCGACCcGGc -3'
miRNA:   3'- -CUUCGUCG--UUG-----GGCUUG--CGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 40876 0.67 0.958338
Target:  5'- cGggGCGGCGACggcguuguuuUCGGGCGUG-CUGGGc -3'
miRNA:   3'- -CuuCGUCGUUG----------GGCUUGCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 42598 0.68 0.932744
Target:  5'- -cAGCAGCuugcaacgcuCCUGAAUGCGcGCCAGa -3'
miRNA:   3'- cuUCGUCGuu--------GGGCUUGCGC-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 43573 0.7 0.88594
Target:  5'- uGGAGCAGCgccguaggcaaGugCCGcGGCGCGuguCCGGGu -3'
miRNA:   3'- -CUUCGUCG-----------UugGGC-UUGCGCu--GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 44005 0.66 0.970816
Target:  5'- cGAGGCAGaacaucuCAACCCaGACGacaaGcGCCAGGa -3'
miRNA:   3'- -CUUCGUC-------GUUGGGcUUGCg---C-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 45865 0.66 0.975562
Target:  5'- --uGuCGGCGGCCCugGAACucucacacagcgcgGCGGCCGGGc -3'
miRNA:   3'- cuuC-GUCGUUGGG--CUUG--------------CGCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.