miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 234847 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 234748 0.71 0.833768
Target:  5'- aAGGCAGgAACCCGGaggaacACGCGcaaCAGGg -3'
miRNA:   3'- cUUCGUCgUUGGGCU------UGCGCug-GUCC- -5'
30185 5' -54.7 NC_006273.1 + 234114 0.66 0.971096
Target:  5'- -cGGCAGCAgcguGCCCGcgucgcGCuGCGACCAc- -3'
miRNA:   3'- cuUCGUCGU----UGGGCu-----UG-CGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 233731 0.69 0.913471
Target:  5'- uGAGGCAGCAGCgUCGcGCGCGgggugcccacgcccaGCCGGu -3'
miRNA:   3'- -CUUCGUCGUUG-GGCuUGCGC---------------UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 233463 0.66 0.973788
Target:  5'- cGGGCAGCAccgcGCCC-AGCGCcaGCCAGc -3'
miRNA:   3'- cUUCGUCGU----UGGGcUUGCGc-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 233095 0.69 0.922403
Target:  5'- cGGGCAGU-ACCCGAACacgGCGcCCAGc -3'
miRNA:   3'- cUUCGUCGuUGGGCUUG---CGCuGGUCc -5'
30185 5' -54.7 NC_006273.1 + 232968 0.73 0.754503
Target:  5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3'
miRNA:   3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5'
30185 5' -54.7 NC_006273.1 + 232922 0.67 0.965125
Target:  5'- --uGCAGCGcguCCC-AGCGCGGCCGc- -3'
miRNA:   3'- cuuCGUCGUu--GGGcUUGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 222838 0.66 0.973527
Target:  5'- aGAGCAGCAa--CGGACGCGucaucucGCCuGGa -3'
miRNA:   3'- cUUCGUCGUuggGCUUGCGC-------UGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 220928 0.68 0.937572
Target:  5'- -cAGCAG-GACUCGAACGCGGCaCAa- -3'
miRNA:   3'- cuUCGUCgUUGGGCUUGCGCUG-GUcc -5'
30185 5' -54.7 NC_006273.1 + 220342 0.67 0.961836
Target:  5'- aAGGCAGCucggcacGCCCcGGgGCGugCGGGc -3'
miRNA:   3'- cUUCGUCGu------UGGGcUUgCGCugGUCC- -5'
30185 5' -54.7 NC_006273.1 + 218200 0.67 0.966383
Target:  5'- uGGGCGGCGGCCgaCGGcggacgaccggcaugGCGCGGCCGu- -3'
miRNA:   3'- cUUCGUCGUUGG--GCU---------------UGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 217670 0.68 0.937572
Target:  5'- aGGAGCAGCGuCagaCGAAuCGCGGcugguggcCCAGGg -3'
miRNA:   3'- -CUUCGUCGUuGg--GCUU-GCGCU--------GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 216924 0.74 0.686765
Target:  5'- --cGguGCGACCCGGcguGCGgaUGACCAGGu -3'
miRNA:   3'- cuuCguCGUUGGGCU---UGC--GCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 215020 0.71 0.84496
Target:  5'- --cGCAGCGACCgucgucugagcagugUGGGCGCuGCCGGGc -3'
miRNA:   3'- cuuCGUCGUUGG---------------GCUUGCGcUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 213947 0.68 0.942172
Target:  5'- -uGGCGGUaAGCUgGAAgGCGACgAGGa -3'
miRNA:   3'- cuUCGUCG-UUGGgCUUgCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 213553 0.67 0.96821
Target:  5'- aGGGCAGCAGaCCCGAG-GUG-CgGGGa -3'
miRNA:   3'- cUUCGUCGUU-GGGCUUgCGCuGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 213135 0.66 0.973788
Target:  5'- uGGAGCGGCA---CGAugGUGACCGucGGc -3'
miRNA:   3'- -CUUCGUCGUuggGCUugCGCUGGU--CC- -5'
30185 5' -54.7 NC_006273.1 + 211289 0.67 0.965125
Target:  5'- gGAGGCcGCGuugguggcCCCGGugGCGcgugacgauaACCAGGu -3'
miRNA:   3'- -CUUCGuCGUu-------GGGCUugCGC----------UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 209432 0.66 0.971096
Target:  5'- -cAGCGGCGuCUCGuAGCGUacaGCCAGGg -3'
miRNA:   3'- cuUCGUCGUuGGGC-UUGCGc--UGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.