Results 1 - 20 of 205 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30185 | 5' | -54.7 | NC_006273.1 | + | 55700 | 0.71 | 0.825561 |
Target: 5'- cGAAGCcGCGGaaaCCGGAcCGCGAcaCCAGGu -3' miRNA: 3'- -CUUCGuCGUUg--GGCUU-GCGCU--GGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 204182 | 0.73 | 0.72592 |
Target: 5'- -cAGCGGCAaccagggcaGCCUGGACGCcGGCCGGc -3' miRNA: 3'- cuUCGUCGU---------UGGGCUUGCG-CUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 68422 | 0.73 | 0.735536 |
Target: 5'- uGAGCGGCGGaCUGGACGUGACCAc- -3' miRNA: 3'- cUUCGUCGUUgGGCUUGCGCUGGUcc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 232968 | 0.73 | 0.754503 |
Target: 5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3' miRNA: 3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 73764 | 0.73 | 0.754503 |
Target: 5'- -cGGCAGCGGCgCCGccAGCgGCGACCAuGGu -3' miRNA: 3'- cuUCGUCGUUG-GGC--UUG-CGCUGGU-CC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 61416 | 0.72 | 0.782157 |
Target: 5'- uGAGCAGCGcGCCCGGcUGCGccucgaacucuACCAGGc -3' miRNA: 3'- cUUCGUCGU-UGGGCUuGCGC-----------UGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 114884 | 0.72 | 0.799962 |
Target: 5'- --uGUAcuGCAGCCCGcuAGCGCGGCCGGc -3' miRNA: 3'- cuuCGU--CGUUGGGC--UUGCGCUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 98683 | 0.72 | 0.799962 |
Target: 5'- -uAGUAGCAACCgCGGcgGCgGCGACCGGc -3' miRNA: 3'- cuUCGUCGUUGG-GCU--UG-CGCUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 135208 | 0.71 | 0.825561 |
Target: 5'- --uGCAGCcACCCGGACGUGAacguCguGGa -3' miRNA: 3'- cuuCGUCGuUGGGCUUGCGCU----GguCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 147512 | 0.73 | 0.72592 |
Target: 5'- -uAGCGGCGGCCCGcucgcucggGAgGCGAUgGGGg -3' miRNA: 3'- cuUCGUCGUUGGGC---------UUgCGCUGgUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 129476 | 0.73 | 0.72592 |
Target: 5'- -cGGCGGCGGCgUGAGCGCGAggcgucggagcUCGGGg -3' miRNA: 3'- cuUCGUCGUUGgGCUUGCGCU-----------GGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 81731 | 0.73 | 0.72592 |
Target: 5'- -uGGCGGCcgcuuGCCCGAgcccuGCGCGgaGCCGGGc -3' miRNA: 3'- cuUCGUCGu----UGGGCU-----UGCGC--UGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 152009 | 0.82 | 0.309283 |
Target: 5'- -cGGCAGCAGCCCG-ACGUGGCCcgcGGGu -3' miRNA: 3'- cuUCGUCGUUGGGCuUGCGCUGG---UCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 129440 | 0.79 | 0.409703 |
Target: 5'- uAGGCAGgAGCUCGAGCGCcGACCAGu -3' miRNA: 3'- cUUCGUCgUUGGGCUUGCG-CUGGUCc -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 68786 | 0.76 | 0.544567 |
Target: 5'- gGAAGCGGUcuggcagcgacuggAACCCGGACGCGuaGCCGGcGg -3' miRNA: 3'- -CUUCGUCG--------------UUGGGCUUGCGC--UGGUC-C- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 191994 | 0.76 | 0.586944 |
Target: 5'- aGGAGCAGCccugguGGCCCGAcaACGCcAUCAGGa -3' miRNA: 3'- -CUUCGUCG------UUGGGCU--UGCGcUGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 48578 | 0.75 | 0.626891 |
Target: 5'- aGggGCGGCAugCCGuugGCGgCG-CCGGGa -3' miRNA: 3'- -CuuCGUCGUugGGCu--UGC-GCuGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 3676 | 0.75 | 0.646915 |
Target: 5'- -cAGCGGCAugCCG-ACGCcGACCcGGGg -3' miRNA: 3'- cuUCGUCGUugGGCuUGCG-CUGG-UCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 216924 | 0.74 | 0.686765 |
Target: 5'- --cGguGCGACCCGGcguGCGgaUGACCAGGu -3' miRNA: 3'- cuuCguCGUUGGGCU---UGC--GCUGGUCC- -5' |
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30185 | 5' | -54.7 | NC_006273.1 | + | 164442 | 0.73 | 0.716226 |
Target: 5'- uGAGCAGCAGCacgCCGcguCGCGcCCAGGc -3' miRNA: 3'- cUUCGUCGUUG---GGCuu-GCGCuGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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