miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30185 5' -54.7 NC_006273.1 + 139300 0.79 0.435596
Target:  5'- cAGGCGGCGACCgCGGACucgccuCGGCCAGGg -3'
miRNA:   3'- cUUCGUCGUUGG-GCUUGc-----GCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 93584 0.71 0.841798
Target:  5'- -cGGCGGCGGCCU--GCGCGGCCu-- -3'
miRNA:   3'- cuUCGUCGUUGGGcuUGCGCUGGucc -5'
30185 5' -54.7 NC_006273.1 + 64073 0.7 0.864771
Target:  5'- uGAGCuGCGGCCaucaGAGCaGCGGCgGGGc -3'
miRNA:   3'- cUUCGuCGUUGGg---CUUG-CGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 234847 0.66 0.980772
Target:  5'- -cGGCGGCggUCgGGgugugucggggGCGCGGCgGGGu -3'
miRNA:   3'- cuUCGUCGuuGGgCU-----------UGCGCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 91801 0.74 0.69664
Target:  5'- aGAAGCGGCGAaaggCCGuACGCGACacgAGGa -3'
miRNA:   3'- -CUUCGUCGUUg---GGCuUGCGCUGg--UCC- -5'
30185 5' -54.7 NC_006273.1 + 131673 0.73 0.716226
Target:  5'- --cGCGGC-GCCCGAagcgcaguguacGCGCGaACCGGGu -3'
miRNA:   3'- cuuCGUCGuUGGGCU------------UGCGC-UGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 4872 0.73 0.72592
Target:  5'- cGAGCGGCAAUCCaGACGagcaGACCAaGGa -3'
miRNA:   3'- cUUCGUCGUUGGGcUUGCg---CUGGU-CC- -5'
30185 5' -54.7 NC_006273.1 + 16134 0.73 0.72592
Target:  5'- -cGGCAGCAccauGCCgGAgcuGCGCGACCAa- -3'
miRNA:   3'- cuUCGUCGU----UGGgCU---UGCGCUGGUcc -5'
30185 5' -54.7 NC_006273.1 + 140813 0.72 0.782157
Target:  5'- gGGAGCAGCGAgggauCCCGGGC-CGGagcCCGGGg -3'
miRNA:   3'- -CUUCGUCGUU-----GGGCUUGcGCU---GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 185422 0.71 0.833768
Target:  5'- gGAAuGCGGC-ACCCGGcugcACGUGGCCuGGc -3'
miRNA:   3'- -CUU-CGUCGuUGGGCU----UGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 93011 0.72 0.808651
Target:  5'- uGAGCGGCug-CgGAACGCGGCCcGGg -3'
miRNA:   3'- cUUCGUCGuugGgCUUGCGCUGGuCC- -5'
30185 5' -54.7 NC_006273.1 + 38075 0.73 0.754503
Target:  5'- cGGGCAGCAGCCgccGCGCGGCCucGGc -3'
miRNA:   3'- cUUCGUCGUUGGgcuUGCGCUGGu-CC- -5'
30185 5' -54.7 NC_006273.1 + 175172 0.78 0.475214
Target:  5'- uGAGUAGCGgucugagcaccuuuaAUCCGGccgGCGCGACCAGGa -3'
miRNA:   3'- cUUCGUCGU---------------UGGGCU---UGCGCUGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 168305 0.71 0.817187
Target:  5'- --cGCGGCGACUCGucGCGCG-CCAGu -3'
miRNA:   3'- cuuCGUCGUUGGGCu-UGCGCuGGUCc -5'
30185 5' -54.7 NC_006273.1 + 145598 0.75 0.626891
Target:  5'- uGAGCGGgGGCCCGAGCGaCGGuCUGGGc -3'
miRNA:   3'- cUUCGUCgUUGGGCUUGC-GCU-GGUCC- -5'
30185 5' -54.7 NC_006273.1 + 168627 0.73 0.745067
Target:  5'- --cGCGGCuGCCCGGGuCGCGcACCAGc -3'
miRNA:   3'- cuuCGUCGuUGGGCUU-GCGC-UGGUCc -5'
30185 5' -54.7 NC_006273.1 + 39856 0.71 0.833768
Target:  5'- aAGGCAGgAACCCGGaggaacACGCGcaaCAGGg -3'
miRNA:   3'- cUUCGUCgUUGGGCU------UGCGCug-GUCC- -5'
30185 5' -54.7 NC_006273.1 + 56926 0.7 0.857306
Target:  5'- -cGGCAGCAGCCCGuuuggcAGCGguuccCGACgAGGu -3'
miRNA:   3'- cuUCGUCGUUGGGC------UUGC-----GCUGgUCC- -5'
30185 5' -54.7 NC_006273.1 + 197256 0.75 0.626891
Target:  5'- -cGGCcucGcCGGCCCGAGCGCG-CCGGGg -3'
miRNA:   3'- cuUCGu--C-GUUGGGCUUGCGCuGGUCC- -5'
30185 5' -54.7 NC_006273.1 + 124052 0.73 0.716226
Target:  5'- -cAGCGGCGcgGCCgCGcuAUGCGGCCAGGc -3'
miRNA:   3'- cuUCGUCGU--UGG-GCu-UGCGCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.