miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 171551 0.66 0.995503
Target:  5'- uGCGUGGGagaGGuCAcuCGCGGCGUGCc -3'
miRNA:   3'- uCGCACUUg--UC-GUucGCGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 15309 0.66 0.995503
Target:  5'- cGGCGUuuuGAGC-GCGAGCGuCAACGUcagacGCg -3'
miRNA:   3'- -UCGCA---CUUGuCGUUCGC-GUUGUA-----CGa -5'
30186 3' -51.8 NC_006273.1 + 74691 0.66 0.995434
Target:  5'- cGCGUccagagaGGGCAGCAAcagaucguagacGCGCGGCA-GCa -3'
miRNA:   3'- uCGCA-------CUUGUCGUU------------CGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 176293 0.66 0.995434
Target:  5'- cGCGUGAGCAGCGcuacucgcuguuuGG-GCGGCcUGUc -3'
miRNA:   3'- uCGCACUUGUCGU-------------UCgCGUUGuACGa -5'
30186 3' -51.8 NC_006273.1 + 113678 0.66 0.994769
Target:  5'- uGGcCGUGAccgAgAGCGuGCGCAGCG-GCUg -3'
miRNA:   3'- -UC-GCACU---UgUCGUuCGCGUUGUaCGA- -5'
30186 3' -51.8 NC_006273.1 + 102067 0.66 0.994769
Target:  5'- uGCGUGAGguGCucGAGCaGCGGCG-GCc -3'
miRNA:   3'- uCGCACUUguCG--UUCG-CGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 52918 0.66 0.994769
Target:  5'- aAGUGUGu-CAGCAuaaugaAGUGCAACuggGCa -3'
miRNA:   3'- -UCGCACuuGUCGU------UCGCGUUGua-CGa -5'
30186 3' -51.8 NC_006273.1 + 30479 0.66 0.994769
Target:  5'- cAGCGUuuucacGAGCAcGCGGGCGC-GCA-GCg -3'
miRNA:   3'- -UCGCA------CUUGU-CGUUCGCGuUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 151579 0.66 0.994769
Target:  5'- uGCGUGAccagacGCcGCAGGCGaAAgGUGCg -3'
miRNA:   3'- uCGCACU------UGuCGUUCGCgUUgUACGa -5'
30186 3' -51.8 NC_006273.1 + 197232 0.66 0.994769
Target:  5'- uGGCGgcgGAGCugucGCAcuuucuGCGCGcggGCGUGCUg -3'
miRNA:   3'- -UCGCa--CUUGu---CGUu-----CGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 157662 0.66 0.994769
Target:  5'- cGGCGUGAcACAGCAcGCugauaCGACGUGg- -3'
miRNA:   3'- -UCGCACU-UGUCGUuCGc----GUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 193246 0.66 0.994769
Target:  5'- cGgGUGGACgacgAGguGGUGCAGCGUGa- -3'
miRNA:   3'- uCgCACUUG----UCguUCGCGUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 124101 0.66 0.994769
Target:  5'- aGGaaaGUGAGCGGCG-GCGuCGACAgaGCUc -3'
miRNA:   3'- -UCg--CACUUGUCGUuCGC-GUUGUa-CGA- -5'
30186 3' -51.8 NC_006273.1 + 2339 0.66 0.994769
Target:  5'- uGGCGgcgGAGCugucGCAcuuucuGCGCGcggGCGUGCUg -3'
miRNA:   3'- -UCGCa--CUUGu---CGUu-----CGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 142006 0.66 0.993941
Target:  5'- gGGUGUGGcuAC-GCGAGUGUGACGUGg- -3'
miRNA:   3'- -UCGCACU--UGuCGUUCGCGUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 144419 0.66 0.993941
Target:  5'- uGCGUGGAggaGGCGaccacGGUGCGAC-UGCa -3'
miRNA:   3'- uCGCACUUg--UCGU-----UCGCGUUGuACGa -5'
30186 3' -51.8 NC_006273.1 + 150627 0.66 0.993941
Target:  5'- gGGCGUuucccGGAgGGUccGCGCAACAcGCa -3'
miRNA:   3'- -UCGCA-----CUUgUCGuuCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 142292 0.66 0.993941
Target:  5'- cGUGUGGGCGGCGuGGaCGCG--GUGCUc -3'
miRNA:   3'- uCGCACUUGUCGU-UC-GCGUugUACGA- -5'
30186 3' -51.8 NC_006273.1 + 76627 0.66 0.993941
Target:  5'- cGGCGUcGACGGCGcacuGGCGCGACccGa- -3'
miRNA:   3'- -UCGCAcUUGUCGU----UCGCGUUGuaCga -5'
30186 3' -51.8 NC_006273.1 + 164682 0.66 0.993941
Target:  5'- -aCGUGGAgGGCGGuCGCAGCAcGCg -3'
miRNA:   3'- ucGCACUUgUCGUUcGCGUUGUaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.