miRNA display CGI


Results 1 - 20 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 222972 0.66 0.991969
Target:  5'- uGCGUGGuuaGCAGCGGcguGCGCAuc-UGCUc -3'
miRNA:   3'- uCGCACU---UGUCGUU---CGCGUuguACGA- -5'
30186 3' -51.8 NC_006273.1 + 124101 0.66 0.994769
Target:  5'- aGGaaaGUGAGCGGCG-GCGuCGACAgaGCUc -3'
miRNA:   3'- -UCg--CACUUGUCGUuCGC-GUUGUa-CGA- -5'
30186 3' -51.8 NC_006273.1 + 30479 0.66 0.994769
Target:  5'- cAGCGUuuucacGAGCAcGCGGGCGC-GCA-GCg -3'
miRNA:   3'- -UCGCA------CUUGU-CGUUCGCGuUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 117117 0.66 0.993395
Target:  5'- cGGCGUGAcggagcgcgagucguACgucaaGGCGAGCGUuucgccugaggcGGCGUGCg -3'
miRNA:   3'- -UCGCACU---------------UG-----UCGUUCGCG------------UUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 61410 0.66 0.99301
Target:  5'- uGCG-GAugAGC-AGCGCGcCcgGCUg -3'
miRNA:   3'- uCGCaCUugUCGuUCGCGUuGuaCGA- -5'
30186 3' -51.8 NC_006273.1 + 137341 0.66 0.993941
Target:  5'- gGGCGUGGA-AGUgcGCGCGGCGcGUUg -3'
miRNA:   3'- -UCGCACUUgUCGuuCGCGUUGUaCGA- -5'
30186 3' -51.8 NC_006273.1 + 102555 0.66 0.990809
Target:  5'- cAGCGUGuGCAGUucGGCGUcgaGACAgacgGCg -3'
miRNA:   3'- -UCGCACuUGUCGu-UCGCG---UUGUa---CGa -5'
30186 3' -51.8 NC_006273.1 + 15309 0.66 0.995503
Target:  5'- cGGCGUuuuGAGC-GCGAGCGuCAACGUcagacGCg -3'
miRNA:   3'- -UCGCA---CUUGuCGUUCGC-GUUGUA-----CGa -5'
30186 3' -51.8 NC_006273.1 + 61222 0.66 0.990809
Target:  5'- cAGCGUcucGAgGCGGC-GGUGCAGCAgaUGCg -3'
miRNA:   3'- -UCGCA---CU-UGUCGuUCGCGUUGU--ACGa -5'
30186 3' -51.8 NC_006273.1 + 76627 0.66 0.993941
Target:  5'- cGGCGUcGACGGCGcacuGGCGCGACccGa- -3'
miRNA:   3'- -UCGCAcUUGUCGU----UCGCGUUGuaCga -5'
30186 3' -51.8 NC_006273.1 + 197232 0.66 0.994769
Target:  5'- uGGCGgcgGAGCugucGCAcuuucuGCGCGcggGCGUGCUg -3'
miRNA:   3'- -UCGCa--CUUGu---CGUu-----CGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 118733 0.66 0.991969
Target:  5'- uGGCGcGGGCAcgGAcCGCAACGUGCUg -3'
miRNA:   3'- -UCGCaCUUGUcgUUcGCGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 126770 0.66 0.99271
Target:  5'- cGCGUGGuccagaGGCGcGCGCAcuucgagcaccuugACGUGCUc -3'
miRNA:   3'- uCGCACUug----UCGUuCGCGU--------------UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 23482 0.66 0.991969
Target:  5'- -cCGUGGACGGgucucuuugacaCGAGCGCGGCAcGCc -3'
miRNA:   3'- ucGCACUUGUC------------GUUCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 142292 0.66 0.993941
Target:  5'- cGUGUGGGCGGCGuGGaCGCG--GUGCUc -3'
miRNA:   3'- uCGCACUUGUCGU-UC-GCGUugUACGA- -5'
30186 3' -51.8 NC_006273.1 + 195621 0.66 0.99301
Target:  5'- aGGCGgcgcCAGCAAGCGCcauacACGUcGCUg -3'
miRNA:   3'- -UCGCacuuGUCGUUCGCGu----UGUA-CGA- -5'
30186 3' -51.8 NC_006273.1 + 102067 0.66 0.994769
Target:  5'- uGCGUGAGguGCucGAGCaGCGGCG-GCc -3'
miRNA:   3'- uCGCACUUguCG--UUCG-CGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 112227 0.66 0.993941
Target:  5'- cGGCgGUGGcaaugcGCGGCGggggcuGGCGCGaggACGUGCUc -3'
miRNA:   3'- -UCG-CACU------UGUCGU------UCGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 119728 0.66 0.99301
Target:  5'- cAGCG-GGAUGGCGccGGCGCGAaagGCg -3'
miRNA:   3'- -UCGCaCUUGUCGU--UCGCGUUguaCGa -5'
30186 3' -51.8 NC_006273.1 + 39524 0.66 0.990809
Target:  5'- cGCGUcucggacaaGAucACGGC--GCGCAACAUGCc -3'
miRNA:   3'- uCGCA---------CU--UGUCGuuCGCGUUGUACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.