Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30186 | 3' | -51.8 | NC_006273.1 | + | 179888 | 1.09 | 0.009078 |
Target: 5'- gAGCGUGAACAGCAAGCGCAACAUGCUg -3' miRNA: 3'- -UCGCACUUGUCGUUCGCGUUGUACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 147565 | 0.78 | 0.574508 |
Target: 5'- cGGCGgGAGCAGCGGGgGCGGCGgggGCa -3' miRNA: 3'- -UCGCaCUUGUCGUUCgCGUUGUa--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 141118 | 0.78 | 0.595218 |
Target: 5'- aGGCG-GG--AGCGGGCGCAGCGUGCg -3' miRNA: 3'- -UCGCaCUugUCGUUCGCGUUGUACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 161884 | 0.77 | 0.605619 |
Target: 5'- uGCGUGGACGGCGAugGCAAgGUGCUg -3' miRNA: 3'- uCGCACUUGUCGUUcgCGUUgUACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 35492 | 0.76 | 0.698128 |
Target: 5'- cGGCGUGGagcugacauacgcGCAGCAgauuGGCGCGGuCGUGCa -3' miRNA: 3'- -UCGCACU-------------UGUCGU----UCGCGUU-GUACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 114521 | 0.76 | 0.709377 |
Target: 5'- cGGCGUGcACGGCGGGCGUuauGACAcGCg -3' miRNA: 3'- -UCGCACuUGUCGUUCGCG---UUGUaCGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 153271 | 0.75 | 0.74949 |
Target: 5'- cGCa-GAGCAGCGAGCGCAGCAgaacgGUa -3' miRNA: 3'- uCGcaCUUGUCGUUCGCGUUGUa----CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 77014 | 0.75 | 0.74949 |
Target: 5'- uAGCGUGAGCGGCGuGCGC-ACGccGCg -3' miRNA: 3'- -UCGCACUUGUCGUuCGCGuUGUa-CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 202554 | 0.74 | 0.768942 |
Target: 5'- cAGCGUGGcCGGCGuggcGGCcgacgGCAGCGUGCUg -3' miRNA: 3'- -UCGCACUuGUCGU----UCG-----CGUUGUACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 110922 | 0.74 | 0.778483 |
Target: 5'- uGCGgcUGGACcGCGAGCGCAGCGUcgGCg -3' miRNA: 3'- uCGC--ACUUGuCGUUCGCGUUGUA--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 39232 | 0.74 | 0.778483 |
Target: 5'- cAGCGUcacGCGGCAuGGCGCGACGcUGCUg -3' miRNA: 3'- -UCGCAcu-UGUCGU-UCGCGUUGU-ACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 163029 | 0.74 | 0.778483 |
Target: 5'- gGGCGccGGACAGCAGGCGCAucACGUagaGCc -3' miRNA: 3'- -UCGCa-CUUGUCGUUCGCGU--UGUA---CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 160802 | 0.74 | 0.797146 |
Target: 5'- cGCGcaguUGGGCGGCGgauuGGgGCGGCAUGCUg -3' miRNA: 3'- uCGC----ACUUGUCGU----UCgCGUUGUACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 21544 | 0.74 | 0.80625 |
Target: 5'- uGGCGUuucgaGGACGGCGgcgcGGCGCAGCG-GCUg -3' miRNA: 3'- -UCGCA-----CUUGUCGU----UCGCGUUGUaCGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 122664 | 0.74 | 0.80625 |
Target: 5'- gGGaCGUGGACcGCGAGUGUAGCGUGg- -3' miRNA: 3'- -UC-GCACUUGuCGUUCGCGUUGUACga -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 200314 | 0.73 | 0.823956 |
Target: 5'- uAGCGUGAGCGGCAcgGGgGCGuCGUGa- -3' miRNA: 3'- -UCGCACUUGUCGU--UCgCGUuGUACga -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 1645 | 0.73 | 0.849134 |
Target: 5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3' miRNA: 3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 196538 | 0.73 | 0.849134 |
Target: 5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3' miRNA: 3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 70132 | 0.72 | 0.857128 |
Target: 5'- cGCGgcuACAGCGAGUGCGGCGaugGCUc -3' miRNA: 3'- uCGCacuUGUCGUUCGCGUUGUa--CGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 167651 | 0.72 | 0.857128 |
Target: 5'- -cUGUGAGCGGC-GGCGCAACG-GCg -3' miRNA: 3'- ucGCACUUGUCGuUCGCGUUGUaCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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