Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30186 | 3' | -51.8 | NC_006273.1 | + | 234774 | 0.72 | 0.879812 |
Target: 5'- cGcCGUGGACAGCAAGCcGCAGaagcgGCg -3' miRNA: 3'- uC-GCACUUGUCGUUCG-CGUUgua--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 194836 | 0.72 | 0.879812 |
Target: 5'- cGcCGUGGACAGCAAGCcGCAGaagcgGCg -3' miRNA: 3'- uC-GCACUUGUCGUUCG-CGUUgua--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 105761 | 0.72 | 0.879812 |
Target: 5'- uGgGUGAGguuGCAGGCGCgAACGUGCa -3' miRNA: 3'- uCgCACUUgu-CGUUCGCG-UUGUACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 189965 | 0.72 | 0.886922 |
Target: 5'- cGGCGUGGGCGGCucGCGgaGACuggGCUg -3' miRNA: 3'- -UCGCACUUGUCGuuCGCg-UUGua-CGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 82912 | 0.72 | 0.886922 |
Target: 5'- uGCGcucgGAGCGGCuggAGGCGCAGC-UGCg -3' miRNA: 3'- uCGCa---CUUGUCG---UUCGCGUUGuACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 152938 | 0.72 | 0.896482 |
Target: 5'- gAGCGUcuugcacacuccguaGAGCAGCugcuuGCGCAGCAcGCa -3' miRNA: 3'- -UCGCA---------------CUUGUCGuu---CGCGUUGUaCGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 158220 | 0.71 | 0.900436 |
Target: 5'- cAGCGUGAGgcGCGGGCGCGcgucgGCcgGCg -3' miRNA: 3'- -UCGCACUUguCGUUCGCGU-----UGuaCGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 73867 | 0.71 | 0.900436 |
Target: 5'- cGCGUGAGC-GC-GGC-CGACAUGCg -3' miRNA: 3'- uCGCACUUGuCGuUCGcGUUGUACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 151836 | 0.71 | 0.906833 |
Target: 5'- cGCGUGAGCAGgucGCGCAGCucgcGCa -3' miRNA: 3'- uCGCACUUGUCguuCGCGUUGua--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 196228 | 0.71 | 0.906833 |
Target: 5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3' miRNA: 3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 1335 | 0.71 | 0.906833 |
Target: 5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3' miRNA: 3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 167175 | 0.71 | 0.912984 |
Target: 5'- --gGUGGccACGGCGGGCGCAGCGgccGCg -3' miRNA: 3'- ucgCACU--UGUCGUUCGCGUUGUa--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 64064 | 0.71 | 0.917728 |
Target: 5'- cGCGUGAcauuggcGCucgAGCAGGCGCAACGUuccaaugGCg -3' miRNA: 3'- uCGCACU-------UG---UCGUUCGCGUUGUA-------CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 226956 | 0.71 | 0.924547 |
Target: 5'- cGCGUGGAUuuUggGCGCGGCAacUGCa -3' miRNA: 3'- uCGCACUUGucGuuCGCGUUGU--ACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 37227 | 0.7 | 0.929955 |
Target: 5'- cGCGUGcccaGGCAGaggaAGGCGCGACGgcgGCg -3' miRNA: 3'- uCGCAC----UUGUCg---UUCGCGUUGUa--CGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 125984 | 0.7 | 0.935116 |
Target: 5'- -cCGUGGcgGCGGCAuuGCGCucgGACAUGCUg -3' miRNA: 3'- ucGCACU--UGUCGUu-CGCG---UUGUACGA- -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 208153 | 0.7 | 0.93858 |
Target: 5'- gGGCGUagacccggacgaGGACAGCAaaacGGCGCAGCcacauaaggccgugGUGCa -3' miRNA: 3'- -UCGCA------------CUUGUCGU----UCGCGUUG--------------UACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 142207 | 0.7 | 0.940028 |
Target: 5'- cAGCGUGAGCGGCGuccGCGguGgAcGCa -3' miRNA: 3'- -UCGCACUUGUCGUu--CGCguUgUaCGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 72585 | 0.7 | 0.940028 |
Target: 5'- cAGaCGUGucCAGC-GGCaGCGACAUGCg -3' miRNA: 3'- -UC-GCACuuGUCGuUCG-CGUUGUACGa -5' |
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30186 | 3' | -51.8 | NC_006273.1 | + | 15608 | 0.7 | 0.944693 |
Target: 5'- cGGUGUGGaaGCAGcCGAGCGCGAgGccGCUg -3' miRNA: 3'- -UCGCACU--UGUC-GUUCGCGUUgUa-CGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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