miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 164682 0.66 0.993941
Target:  5'- -aCGUGGAgGGCGGuCGCAGCAcGCg -3'
miRNA:   3'- ucGCACUUgUCGUUcGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 194437 0.66 0.993941
Target:  5'- cGGUGcUGGGCaAGCGAGuCGCGACGccGCa -3'
miRNA:   3'- -UCGC-ACUUG-UCGUUC-GCGUUGUa-CGa -5'
30186 3' -51.8 NC_006273.1 + 142006 0.66 0.993941
Target:  5'- gGGUGUGGcuAC-GCGAGUGUGACGUGg- -3'
miRNA:   3'- -UCGCACU--UGuCGUUCGCGUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 144419 0.66 0.993941
Target:  5'- uGCGUGGAggaGGCGaccacGGUGCGAC-UGCa -3'
miRNA:   3'- uCGCACUUg--UCGU-----UCGCGUUGuACGa -5'
30186 3' -51.8 NC_006273.1 + 117117 0.66 0.993395
Target:  5'- cGGCGUGAcggagcgcgagucguACgucaaGGCGAGCGUuucgccugaggcGGCGUGCg -3'
miRNA:   3'- -UCGCACU---------------UG-----UCGUUCGCG------------UUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 119728 0.66 0.99301
Target:  5'- cAGCG-GGAUGGCGccGGCGCGAaagGCg -3'
miRNA:   3'- -UCGCaCUUGUCGU--UCGCGUUguaCGa -5'
30186 3' -51.8 NC_006273.1 + 162282 0.66 0.99301
Target:  5'- cGGCGguccuccAGCAGCAgcuGGUGCAucACGUGCc -3'
miRNA:   3'- -UCGCac-----UUGUCGU---UCGCGU--UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 729 0.66 0.99301
Target:  5'- aGGCGgcgcCAGCAAGCGCcauacACGUcGCUg -3'
miRNA:   3'- -UCGCacuuGUCGUUCGCGu----UGUA-CGA- -5'
30186 3' -51.8 NC_006273.1 + 195621 0.66 0.99301
Target:  5'- aGGCGgcgcCAGCAAGCGCcauacACGUcGCUg -3'
miRNA:   3'- -UCGCacuuGUCGUUCGCGu----UGUA-CGA- -5'
30186 3' -51.8 NC_006273.1 + 61410 0.66 0.99301
Target:  5'- uGCG-GAugAGC-AGCGCGcCcgGCUg -3'
miRNA:   3'- uCGCaCUugUCGuUCGCGUuGuaCGA- -5'
30186 3' -51.8 NC_006273.1 + 215747 0.66 0.99301
Target:  5'- aAGCGaccGCAGUggGCccaCAGCAUGCUc -3'
miRNA:   3'- -UCGCacuUGUCGuuCGc--GUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 126770 0.66 0.99271
Target:  5'- cGCGUGGuccagaGGCGcGCGCAcuucgagcaccuugACGUGCUc -3'
miRNA:   3'- uCGCACUug----UCGUuCGCGU--------------UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 149632 0.66 0.9924
Target:  5'- cGGCGacGGCAGCGAaaacggcuuacggguGCGCAAC-UGCg -3'
miRNA:   3'- -UCGCacUUGUCGUU---------------CGCGUUGuACGa -5'
30186 3' -51.8 NC_006273.1 + 118733 0.66 0.991969
Target:  5'- uGGCGcGGGCAcgGAcCGCAACGUGCUg -3'
miRNA:   3'- -UCGCaCUUGUcgUUcGCGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 164244 0.66 0.991969
Target:  5'- uGCGUGAgcaccgugauagGCGGCGAG-GCGAaacugGUGCUg -3'
miRNA:   3'- uCGCACU------------UGUCGUUCgCGUUg----UACGA- -5'
30186 3' -51.8 NC_006273.1 + 222972 0.66 0.991969
Target:  5'- uGCGUGGuuaGCAGCGGcguGCGCAuc-UGCUc -3'
miRNA:   3'- uCGCACU---UGUCGUU---CGCGUuguACGA- -5'
30186 3' -51.8 NC_006273.1 + 23482 0.66 0.991969
Target:  5'- -cCGUGGACGGgucucuuugacaCGAGCGCGGCAcGCc -3'
miRNA:   3'- ucGCACUUGUC------------GUUCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 39524 0.66 0.990809
Target:  5'- cGCGUcucggacaaGAucACGGC--GCGCAACAUGCc -3'
miRNA:   3'- uCGCA---------CU--UGUCGuuCGCGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 61222 0.66 0.990809
Target:  5'- cAGCGUcucGAgGCGGC-GGUGCAGCAgaUGCg -3'
miRNA:   3'- -UCGCA---CU-UGUCGuUCGCGUUGU--ACGa -5'
30186 3' -51.8 NC_006273.1 + 102555 0.66 0.990809
Target:  5'- cAGCGUGuGCAGUucGGCGUcgaGACAgacgGCg -3'
miRNA:   3'- -UCGCACuUGUCGu-UCGCG---UUGUa---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.