miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 99950 0.66 0.990809
Target:  5'- gAGCGUGGAgA-CGAGCGC-GCAgccGCUg -3'
miRNA:   3'- -UCGCACUUgUcGUUCGCGuUGUa--CGA- -5'
30186 3' -51.8 NC_006273.1 + 147303 0.67 0.990052
Target:  5'- aGGCGUGu---GCAGGUGCAuuacguuguaggccgACAUGUUg -3'
miRNA:   3'- -UCGCACuuguCGUUCGCGU---------------UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 178966 0.67 0.98952
Target:  5'- gAGCGUGGGCcGCGuGCcugGgAACGUGCg -3'
miRNA:   3'- -UCGCACUUGuCGUuCG---CgUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 208474 0.67 0.98952
Target:  5'- gGGCGUGAGCAuCAGGaGUGugGUGUg -3'
miRNA:   3'- -UCGCACUUGUcGUUCgCGUugUACGa -5'
30186 3' -51.8 NC_006273.1 + 154041 0.67 0.98952
Target:  5'- gAGCGUGc---GCAAGgGCGuugACGUGCUc -3'
miRNA:   3'- -UCGCACuuguCGUUCgCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 73976 0.67 0.98952
Target:  5'- uGGCGU--ACAGCucGCGCAGCAg--- -3'
miRNA:   3'- -UCGCAcuUGUCGuuCGCGUUGUacga -5'
30186 3' -51.8 NC_006273.1 + 103316 0.67 0.98952
Target:  5'- cGCGggcucGggUAGCAGGUaGCGACGuUGCg -3'
miRNA:   3'- uCGCa----CuuGUCGUUCG-CGUUGU-ACGa -5'
30186 3' -51.8 NC_006273.1 + 194055 0.67 0.98952
Target:  5'- gAGUGUGAGCAuagcuguauGC-AGCGUuGCGUGUa -3'
miRNA:   3'- -UCGCACUUGU---------CGuUCGCGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 70938 0.67 0.98952
Target:  5'- cGCcUGGGC-GCGA-CGCGGCGUGCUg -3'
miRNA:   3'- uCGcACUUGuCGUUcGCGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 205835 0.67 0.989384
Target:  5'- cAGCGUGGAaGGCGGucacuugcuGCGCAACAUcaaaaccGCUu -3'
miRNA:   3'- -UCGCACUUgUCGUU---------CGCGUUGUA-------CGA- -5'
30186 3' -51.8 NC_006273.1 + 41038 0.67 0.988095
Target:  5'- gGGCGUcgcgGGAUGGCGGGCuGUuGCGUGCc -3'
miRNA:   3'- -UCGCA----CUUGUCGUUCG-CGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 169971 0.67 0.988095
Target:  5'- cGGCGUcGAcACGGCAGGUGCGG-AUGUc -3'
miRNA:   3'- -UCGCA-CU-UGUCGUUCGCGUUgUACGa -5'
30186 3' -51.8 NC_006273.1 + 143433 0.67 0.988095
Target:  5'- cGCGUuggaGAACGGCAAGCuCAcGCAcUGCUc -3'
miRNA:   3'- uCGCA----CUUGUCGUUCGcGU-UGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 742 0.67 0.988095
Target:  5'- cGGCGUccuCAGCGcGUuuGCGGCGUGCUg -3'
miRNA:   3'- -UCGCAcuuGUCGUuCG--CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 193794 0.67 0.988095
Target:  5'- cGGUGUGGAagccgaggaGGCuauGGCGCGgcggcgacagcGCAUGCUg -3'
miRNA:   3'- -UCGCACUUg--------UCGu--UCGCGU-----------UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 40680 0.67 0.988095
Target:  5'- cGGCGUccuCAGCGcGUuuGCGGCGUGCUg -3'
miRNA:   3'- -UCGCAcuuGUCGUuCG--CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 147944 0.67 0.988095
Target:  5'- gAGCGUcggcgcggccuaGAGCAGCGuagcgccguguuGGCGC-GCGUGUUg -3'
miRNA:   3'- -UCGCA------------CUUGUCGU------------UCGCGuUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 34185 0.67 0.988095
Target:  5'- uGGCGUGGaaaaaaACGGC-GGCGCG--GUGCg -3'
miRNA:   3'- -UCGCACU------UGUCGuUCGCGUugUACGa -5'
30186 3' -51.8 NC_006273.1 + 1100 0.67 0.988095
Target:  5'- gGGCGUcgcgGGAUGGCGGGCuGUuGCGUGCc -3'
miRNA:   3'- -UCGCA----CUUGUCGUUCG-CGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 188774 0.67 0.986524
Target:  5'- cAGCGUGGuCGGCuc-CGuCGGCGUGCg -3'
miRNA:   3'- -UCGCACUuGUCGuucGC-GUUGUACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.