miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 76 0.69 0.964426
Target:  5'- uGUGUGGACGGCGacGGCGacuaguuGCGUGUg -3'
miRNA:   3'- uCGCACUUGUCGU--UCGCgu-----UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 729 0.66 0.99301
Target:  5'- aGGCGgcgcCAGCAAGCGCcauacACGUcGCUg -3'
miRNA:   3'- -UCGCacuuGUCGUUCGCGu----UGUA-CGA- -5'
30186 3' -51.8 NC_006273.1 + 742 0.67 0.988095
Target:  5'- cGGCGUccuCAGCGcGUuuGCGGCGUGCUg -3'
miRNA:   3'- -UCGCAcuuGUCGUuCG--CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 1100 0.67 0.988095
Target:  5'- gGGCGUcgcgGGAUGGCGGGCuGUuGCGUGCc -3'
miRNA:   3'- -UCGCA----CUUGUCGUUCG-CGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 1335 0.71 0.906833
Target:  5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3'
miRNA:   3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5'
30186 3' -51.8 NC_006273.1 + 1645 0.73 0.849134
Target:  5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 2339 0.66 0.994769
Target:  5'- uGGCGgcgGAGCugucGCAcuuucuGCGCGcggGCGUGCUg -3'
miRNA:   3'- -UCGCa--CUUGu---CGUu-----CGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 12689 0.67 0.984798
Target:  5'- gGGUGUGGugGGCGAGuCGCuacccuCcgGCg -3'
miRNA:   3'- -UCGCACUugUCGUUC-GCGuu----GuaCGa -5'
30186 3' -51.8 NC_006273.1 + 13217 0.69 0.960946
Target:  5'- cGGCGUu-ACAGCGucuGGUGCGGCAUGa- -3'
miRNA:   3'- -UCGCAcuUGUCGU---UCGCGUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 14021 0.67 0.986524
Target:  5'- uGGCG-GAGCGGgGAGCGCcgauguACcUGCa -3'
miRNA:   3'- -UCGCaCUUGUCgUUCGCGu-----UGuACGa -5'
30186 3' -51.8 NC_006273.1 + 15309 0.66 0.995503
Target:  5'- cGGCGUuuuGAGC-GCGAGCGuCAACGUcagacGCg -3'
miRNA:   3'- -UCGCA---CUUGuCGUUCGC-GUUGUA-----CGa -5'
30186 3' -51.8 NC_006273.1 + 15608 0.7 0.944693
Target:  5'- cGGUGUGGaaGCAGcCGAGCGCGAgGccGCUg -3'
miRNA:   3'- -UCGCACU--UGUC-GUUCGCGUUgUa-CGA- -5'
30186 3' -51.8 NC_006273.1 + 21544 0.74 0.80625
Target:  5'- uGGCGUuucgaGGACGGCGgcgcGGCGCAGCG-GCUg -3'
miRNA:   3'- -UCGCA-----CUUGUCGU----UCGCGUUGUaCGA- -5'
30186 3' -51.8 NC_006273.1 + 23482 0.66 0.991969
Target:  5'- -cCGUGGACGGgucucuuugacaCGAGCGCGGCAcGCc -3'
miRNA:   3'- ucGCACUUGUC------------GUUCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 30479 0.66 0.994769
Target:  5'- cAGCGUuuucacGAGCAcGCGGGCGC-GCA-GCg -3'
miRNA:   3'- -UCGCA------CUUGU-CGUUCGCGuUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 33425 0.69 0.957237
Target:  5'- gGGCGUcGGCGGCGcgcgacagccccGGCGCAgcuugaaaACGUGCa -3'
miRNA:   3'- -UCGCAcUUGUCGU------------UCGCGU--------UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 34185 0.67 0.988095
Target:  5'- uGGCGUGGaaaaaaACGGC-GGCGCG--GUGCg -3'
miRNA:   3'- -UCGCACU------UGUCGuUCGCGUugUACGa -5'
30186 3' -51.8 NC_006273.1 + 35492 0.76 0.698128
Target:  5'- cGGCGUGGagcugacauacgcGCAGCAgauuGGCGCGGuCGUGCa -3'
miRNA:   3'- -UCGCACU-------------UGUCGU----UCGCGUU-GUACGa -5'
30186 3' -51.8 NC_006273.1 + 36787 0.68 0.976178
Target:  5'- aGGCccaGUGGcgGCAGCAGGUGCAcgcugcucacgACGUGUg -3'
miRNA:   3'- -UCG---CACU--UGUCGUUCGCGU-----------UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 37227 0.7 0.929955
Target:  5'- cGCGUGcccaGGCAGaggaAGGCGCGACGgcgGCg -3'
miRNA:   3'- uCGCAC----UUGUCg---UUCGCGUUGUa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.