miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 39232 0.74 0.778483
Target:  5'- cAGCGUcacGCGGCAuGGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCAcu-UGUCGU-UCGCGUUGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 39467 0.68 0.978607
Target:  5'- uGCGUGGAC-GCGgaacAGCGcCAAC-UGCUg -3'
miRNA:   3'- uCGCACUUGuCGU----UCGC-GUUGuACGA- -5'
30186 3' -51.8 NC_006273.1 + 39524 0.66 0.990809
Target:  5'- cGCGUcucggacaaGAucACGGC--GCGCAACAUGCc -3'
miRNA:   3'- uCGCA---------CU--UGUCGuuCGCGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 39583 0.68 0.973552
Target:  5'- cGCGaccgagGGGCGGgGGGCGCGgcgACAUGCc -3'
miRNA:   3'- uCGCa-----CUUGUCgUUCGCGU---UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 40014 0.69 0.964426
Target:  5'- uGUGUGGACGGCGacGGCGacuaguuGCGUGUg -3'
miRNA:   3'- uCGCACUUGUCGU--UCGCgu-----UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 40680 0.67 0.988095
Target:  5'- cGGCGUccuCAGCGcGUuuGCGGCGUGCUg -3'
miRNA:   3'- -UCGCAcuuGUCGUuCG--CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 41038 0.67 0.988095
Target:  5'- gGGCGUcgcgGGAUGGCGGGCuGUuGCGUGCc -3'
miRNA:   3'- -UCGCA----CUUGUCGUUCG-CGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 41513 0.68 0.976178
Target:  5'- cGGCGUGAggaugGCAGCGccGGCGcCAGCAg--- -3'
miRNA:   3'- -UCGCACU-----UGUCGU--UCGC-GUUGUacga -5'
30186 3' -51.8 NC_006273.1 + 48561 0.69 0.953295
Target:  5'- aGGCGUGuGGCGGgGugaGGgGCGGCAUGCc -3'
miRNA:   3'- -UCGCAC-UUGUCgU---UCgCGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 52842 0.68 0.976178
Target:  5'- cGGCGUaaccggugccgaGAACgccgGGUGAGCGC-ACAUGCUu -3'
miRNA:   3'- -UCGCA------------CUUG----UCGUUCGCGuUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 52918 0.66 0.994769
Target:  5'- aAGUGUGu-CAGCAuaaugaAGUGCAACuggGCa -3'
miRNA:   3'- -UCGCACuuGUCGU------UCGCGUUGua-CGa -5'
30186 3' -51.8 NC_006273.1 + 59879 0.7 0.949115
Target:  5'- aAGCGacccAACAGCAGGuCGCAACGcgGCg -3'
miRNA:   3'- -UCGCac--UUGUCGUUC-GCGUUGUa-CGa -5'
30186 3' -51.8 NC_006273.1 + 61222 0.66 0.990809
Target:  5'- cAGCGUcucGAgGCGGC-GGUGCAGCAgaUGCg -3'
miRNA:   3'- -UCGCA---CU-UGUCGuUCGCGUUGU--ACGa -5'
30186 3' -51.8 NC_006273.1 + 61410 0.66 0.99301
Target:  5'- uGCG-GAugAGC-AGCGCGcCcgGCUg -3'
miRNA:   3'- uCGCaCUugUCGuUCGCGUuGuaCGA- -5'
30186 3' -51.8 NC_006273.1 + 63130 0.67 0.986524
Target:  5'- gGGaCcUGcACAGCAAGUGgGGCGUGCa -3'
miRNA:   3'- -UC-GcACuUGUCGUUCGCgUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 64064 0.71 0.917728
Target:  5'- cGCGUGAcauuggcGCucgAGCAGGCGCAACGUuccaaugGCg -3'
miRNA:   3'- uCGCACU-------UG---UCGUUCGCGUUGUA-------CGa -5'
30186 3' -51.8 NC_006273.1 + 64730 0.67 0.986524
Target:  5'- cGCGUcugGAcgcGCGGCuaGAGCGCGAguUGCa -3'
miRNA:   3'- uCGCA---CU---UGUCG--UUCGCGUUguACGa -5'
30186 3' -51.8 NC_006273.1 + 65833 0.7 0.949115
Target:  5'- cGGCG-GcGCAGCAGGCGguACGcGCc -3'
miRNA:   3'- -UCGCaCuUGUCGUUCGCguUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 65943 0.7 0.944693
Target:  5'- -aCGUGAACGGC-AGCGUuACuUGCUg -3'
miRNA:   3'- ucGCACUUGUCGuUCGCGuUGuACGA- -5'
30186 3' -51.8 NC_006273.1 + 70132 0.72 0.857128
Target:  5'- cGCGgcuACAGCGAGUGCGGCGaugGCUc -3'
miRNA:   3'- uCGCacuUGUCGUUCGCGUUGUa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.