miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 234907 0.69 0.964426
Target:  5'- uGUGUGGACGGCGacGGCGacuaguuGCGUGUg -3'
miRNA:   3'- uCGCACUUGUCGU--UCGCgu-----UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 234774 0.72 0.879812
Target:  5'- cGcCGUGGACAGCAAGCcGCAGaagcgGCg -3'
miRNA:   3'- uC-GCACUUGUCGUUCG-CGUUgua--CGa -5'
30186 3' -51.8 NC_006273.1 + 234476 0.68 0.973552
Target:  5'- cGCGaccgagGGGCGGgGGGCGCGgcgACAUGCc -3'
miRNA:   3'- uCGCa-----CUUGUCgUUCGCGU---UGUACGa -5'
30186 3' -51.8 NC_006273.1 + 226956 0.71 0.924547
Target:  5'- cGCGUGGAUuuUggGCGCGGCAacUGCa -3'
miRNA:   3'- uCGCACUUGucGuuCGCGUUGU--ACGa -5'
30186 3' -51.8 NC_006273.1 + 226249 0.68 0.978373
Target:  5'- aAGCGUGAgggggguGCuGUAGGUcuGCAugGUGCa -3'
miRNA:   3'- -UCGCACU-------UGuCGUUCG--CGUugUACGa -5'
30186 3' -51.8 NC_006273.1 + 222972 0.66 0.991969
Target:  5'- uGCGUGGuuaGCAGCGGcguGCGCAuc-UGCUc -3'
miRNA:   3'- uCGCACU---UGUCGUU---CGCGUuguACGA- -5'
30186 3' -51.8 NC_006273.1 + 215747 0.66 0.99301
Target:  5'- aAGCGaccGCAGUggGCccaCAGCAUGCUc -3'
miRNA:   3'- -UCGCacuUGUCGuuCGc--GUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 214390 0.69 0.960946
Target:  5'- gAGCGUGAggaacgaaaGCAGCAucaccacguAGaCGCAGCugAUGCa -3'
miRNA:   3'- -UCGCACU---------UGUCGU---------UC-GCGUUG--UACGa -5'
30186 3' -51.8 NC_006273.1 + 208474 0.67 0.98952
Target:  5'- gGGCGUGAGCAuCAGGaGUGugGUGUg -3'
miRNA:   3'- -UCGCACUUGUcGUUCgCGUugUACGa -5'
30186 3' -51.8 NC_006273.1 + 208153 0.7 0.93858
Target:  5'- gGGCGUagacccggacgaGGACAGCAaaacGGCGCAGCcacauaaggccgugGUGCa -3'
miRNA:   3'- -UCGCA------------CUUGUCGU----UCGCGUUG--------------UACGa -5'
30186 3' -51.8 NC_006273.1 + 205835 0.67 0.989384
Target:  5'- cAGCGUGGAaGGCGGucacuugcuGCGCAACAUcaaaaccGCUu -3'
miRNA:   3'- -UCGCACUUgUCGUU---------CGCGUUGUA-------CGA- -5'
30186 3' -51.8 NC_006273.1 + 203728 0.66 0.993941
Target:  5'- uGGUGcUGGagAUAGC-AGCGCAGCAcGCg -3'
miRNA:   3'- -UCGC-ACU--UGUCGuUCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 202554 0.74 0.768942
Target:  5'- cAGCGUGGcCGGCGuggcGGCcgacgGCAGCGUGCUg -3'
miRNA:   3'- -UCGCACUuGUCGU----UCG-----CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 201902 0.67 0.982909
Target:  5'- cAGCGUGucgcugcGCAuCAAGCGCGAgcUGCUg -3'
miRNA:   3'- -UCGCACu------UGUcGUUCGCGUUguACGA- -5'
30186 3' -51.8 NC_006273.1 + 200314 0.73 0.823956
Target:  5'- uAGCGUGAGCGGCAcgGGgGCGuCGUGa- -3'
miRNA:   3'- -UCGCACUUGUCGU--UCgCGUuGUACga -5'
30186 3' -51.8 NC_006273.1 + 199434 0.68 0.976178
Target:  5'- gAGCGUgcGAGCGGgGuucaccugcAGCGCuACGUGCg -3'
miRNA:   3'- -UCGCA--CUUGUCgU---------UCGCGuUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 197232 0.66 0.994769
Target:  5'- uGGCGgcgGAGCugucGCAcuuucuGCGCGcggGCGUGCUg -3'
miRNA:   3'- -UCGCa--CUUGu---CGUu-----CGCGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 196538 0.73 0.849134
Target:  5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 196228 0.71 0.906833
Target:  5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3'
miRNA:   3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5'
30186 3' -51.8 NC_006273.1 + 195621 0.66 0.99301
Target:  5'- aGGCGgcgcCAGCAAGCGCcauacACGUcGCUg -3'
miRNA:   3'- -UCGCacuuGUCGUUCGCGu----UGUA-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.