miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 208153 0.7 0.93858
Target:  5'- gGGCGUagacccggacgaGGACAGCAaaacGGCGCAGCcacauaaggccgugGUGCa -3'
miRNA:   3'- -UCGCA------------CUUGUCGU----UCGCGUUG--------------UACGa -5'
30186 3' -51.8 NC_006273.1 + 73867 0.71 0.900436
Target:  5'- cGCGUGAGC-GC-GGC-CGACAUGCg -3'
miRNA:   3'- uCGCACUUGuCGuUCGcGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 151836 0.71 0.906833
Target:  5'- cGCGUGAGCAGgucGCGCAGCucgcGCa -3'
miRNA:   3'- uCGCACUUGUCguuCGCGUUGua--CGa -5'
30186 3' -51.8 NC_006273.1 + 196228 0.71 0.906833
Target:  5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3'
miRNA:   3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5'
30186 3' -51.8 NC_006273.1 + 167175 0.71 0.912984
Target:  5'- --gGUGGccACGGCGGGCGCAGCGgccGCg -3'
miRNA:   3'- ucgCACU--UGUCGUUCGCGUUGUa--CGa -5'
30186 3' -51.8 NC_006273.1 + 64064 0.71 0.917728
Target:  5'- cGCGUGAcauuggcGCucgAGCAGGCGCAACGUuccaaugGCg -3'
miRNA:   3'- uCGCACU-------UG---UCGUUCGCGUUGUA-------CGa -5'
30186 3' -51.8 NC_006273.1 + 226956 0.71 0.924547
Target:  5'- cGCGUGGAUuuUggGCGCGGCAacUGCa -3'
miRNA:   3'- uCGCACUUGucGuuCGCGUUGU--ACGa -5'
30186 3' -51.8 NC_006273.1 + 37227 0.7 0.929955
Target:  5'- cGCGUGcccaGGCAGaggaAGGCGCGACGgcgGCg -3'
miRNA:   3'- uCGCAC----UUGUCg---UUCGCGUUGUa--CGa -5'
30186 3' -51.8 NC_006273.1 + 125984 0.7 0.935116
Target:  5'- -cCGUGGcgGCGGCAuuGCGCucgGACAUGCUg -3'
miRNA:   3'- ucGCACU--UGUCGUu-CGCG---UUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 152938 0.72 0.896482
Target:  5'- gAGCGUcuugcacacuccguaGAGCAGCugcuuGCGCAGCAcGCa -3'
miRNA:   3'- -UCGCA---------------CUUGUCGuu---CGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 194836 0.72 0.879812
Target:  5'- cGcCGUGGACAGCAAGCcGCAGaagcgGCg -3'
miRNA:   3'- uC-GCACUUGUCGUUCG-CGUUgua--CGa -5'
30186 3' -51.8 NC_006273.1 + 167651 0.72 0.857128
Target:  5'- -cUGUGAGCGGC-GGCGCAACG-GCg -3'
miRNA:   3'- ucGCACUUGUCGuUCGCGUUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 161884 0.77 0.605619
Target:  5'- uGCGUGGACGGCGAugGCAAgGUGCUg -3'
miRNA:   3'- uCGCACUUGUCGUUcgCGUUgUACGA- -5'
30186 3' -51.8 NC_006273.1 + 35492 0.76 0.698128
Target:  5'- cGGCGUGGagcugacauacgcGCAGCAgauuGGCGCGGuCGUGCa -3'
miRNA:   3'- -UCGCACU-------------UGUCGU----UCGCGUU-GUACGa -5'
30186 3' -51.8 NC_006273.1 + 77014 0.75 0.74949
Target:  5'- uAGCGUGAGCGGCGuGCGC-ACGccGCg -3'
miRNA:   3'- -UCGCACUUGUCGUuCGCGuUGUa-CGa -5'
30186 3' -51.8 NC_006273.1 + 39232 0.74 0.778483
Target:  5'- cAGCGUcacGCGGCAuGGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCAcu-UGUCGU-UCGCGUUGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 160802 0.74 0.797146
Target:  5'- cGCGcaguUGGGCGGCGgauuGGgGCGGCAUGCUg -3'
miRNA:   3'- uCGC----ACUUGUCGU----UCgCGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 21544 0.74 0.80625
Target:  5'- uGGCGUuucgaGGACGGCGgcgcGGCGCAGCG-GCUg -3'
miRNA:   3'- -UCGCA-----CUUGUCGU----UCGCGUUGUaCGA- -5'
30186 3' -51.8 NC_006273.1 + 122664 0.74 0.80625
Target:  5'- gGGaCGUGGACcGCGAGUGUAGCGUGg- -3'
miRNA:   3'- -UC-GCACUUGuCGUUCGCGUUGUACga -5'
30186 3' -51.8 NC_006273.1 + 196538 0.73 0.849134
Target:  5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.