miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 3' -51.8 NC_006273.1 + 147565 0.78 0.574508
Target:  5'- cGGCGgGAGCAGCGGGgGCGGCGgggGCa -3'
miRNA:   3'- -UCGCaCUUGUCGUUCgCGUUGUa--CGa -5'
30186 3' -51.8 NC_006273.1 + 15608 0.7 0.944693
Target:  5'- cGGUGUGGaaGCAGcCGAGCGCGAgGccGCUg -3'
miRNA:   3'- -UCGCACU--UGUC-GUUCGCGUUgUa-CGA- -5'
30186 3' -51.8 NC_006273.1 + 101403 0.7 0.949115
Target:  5'- gAGCGUgcaGAGCAGCAcGCuCAuccGCGUGCUc -3'
miRNA:   3'- -UCGCA---CUUGUCGUuCGcGU---UGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 15309 0.66 0.995503
Target:  5'- cGGCGUuuuGAGC-GCGAGCGuCAACGUcagacGCg -3'
miRNA:   3'- -UCGCA---CUUGuCGUUCGC-GUUGUA-----CGa -5'
30186 3' -51.8 NC_006273.1 + 202554 0.74 0.768942
Target:  5'- cAGCGUGGcCGGCGuggcGGCcgacgGCAGCGUGCUg -3'
miRNA:   3'- -UCGCACUuGUCGU----UCG-----CGUUGUACGA- -5'
30186 3' -51.8 NC_006273.1 + 163029 0.74 0.778483
Target:  5'- gGGCGccGGACAGCAGGCGCAucACGUagaGCc -3'
miRNA:   3'- -UCGCa-CUUGUCGUUCGCGU--UGUA---CGa -5'
30186 3' -51.8 NC_006273.1 + 200314 0.73 0.823956
Target:  5'- uAGCGUGAGCGGCAcgGGgGCGuCGUGa- -3'
miRNA:   3'- -UCGCACUUGUCGU--UCgCGUuGUACga -5'
30186 3' -51.8 NC_006273.1 + 1645 0.73 0.849134
Target:  5'- gGGCGUGGGCAcccCGcGCGCGACGcUGCUg -3'
miRNA:   3'- -UCGCACUUGUc--GUuCGCGUUGU-ACGA- -5'
30186 3' -51.8 NC_006273.1 + 234774 0.72 0.879812
Target:  5'- cGcCGUGGACAGCAAGCcGCAGaagcgGCg -3'
miRNA:   3'- uC-GCACUUGUCGUUCG-CGUUgua--CGa -5'
30186 3' -51.8 NC_006273.1 + 72585 0.7 0.940028
Target:  5'- cAGaCGUGucCAGC-GGCaGCGACAUGCg -3'
miRNA:   3'- -UC-GCACuuGUCGuUCG-CGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 189965 0.72 0.886922
Target:  5'- cGGCGUGGGCGGCucGCGgaGACuggGCUg -3'
miRNA:   3'- -UCGCACUUGUCGuuCGCg-UUGua-CGA- -5'
30186 3' -51.8 NC_006273.1 + 105761 0.72 0.879812
Target:  5'- uGgGUGAGguuGCAGGCGCgAACGUGCa -3'
miRNA:   3'- uCgCACUUgu-CGUUCGCG-UUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 141118 0.78 0.595218
Target:  5'- aGGCG-GG--AGCGGGCGCAGCGUGCg -3'
miRNA:   3'- -UCGCaCUugUCGUUCGCGUUGUACGa -5'
30186 3' -51.8 NC_006273.1 + 158220 0.71 0.900436
Target:  5'- cAGCGUGAGgcGCGGGCGCGcgucgGCcgGCg -3'
miRNA:   3'- -UCGCACUUguCGUUCGCGU-----UGuaCGa -5'
30186 3' -51.8 NC_006273.1 + 114521 0.76 0.709377
Target:  5'- cGGCGUGcACGGCGGGCGUuauGACAcGCg -3'
miRNA:   3'- -UCGCACuUGUCGUUCGCG---UUGUaCGa -5'
30186 3' -51.8 NC_006273.1 + 70132 0.72 0.857128
Target:  5'- cGCGgcuACAGCGAGUGCGGCGaugGCUc -3'
miRNA:   3'- uCGCacuUGUCGUUCGCGUUGUa--CGA- -5'
30186 3' -51.8 NC_006273.1 + 1335 0.71 0.906833
Target:  5'- cGCGcagccagaUGAACGGCGugGGCGCGACGgaccUGCg -3'
miRNA:   3'- uCGC--------ACUUGUCGU--UCGCGUUGU----ACGa -5'
30186 3' -51.8 NC_006273.1 + 65943 0.7 0.944693
Target:  5'- -aCGUGAACGGC-AGCGUuACuUGCUg -3'
miRNA:   3'- ucGCACUUGUCGuUCGCGuUGuACGA- -5'
30186 3' -51.8 NC_006273.1 + 153271 0.75 0.74949
Target:  5'- cGCa-GAGCAGCGAGCGCAGCAgaacgGUa -3'
miRNA:   3'- uCGcaCUUGUCGUUCGCGUUGUa----CGa -5'
30186 3' -51.8 NC_006273.1 + 110922 0.74 0.778483
Target:  5'- uGCGgcUGGACcGCGAGCGCAGCGUcgGCg -3'
miRNA:   3'- uCGC--ACUUGuCGUUCGCGUUGUA--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.