miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 151273 0.66 0.898851
Target:  5'- -----cGCGGCGcgGaCCuuucaagcguuccugGGCCGCCGCUc -3'
miRNA:   3'- ccuuuaCGCCGCa-C-GG---------------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 71529 0.66 0.896398
Target:  5'- aGGAAcgagGGCccucGCCGGCgGCCGCUg -3'
miRNA:   3'- -CCUUuacgCCGca--CGGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 99353 0.66 0.896398
Target:  5'- cGGAAcGCGGCccGCggauCGGCCAgCGCUg -3'
miRNA:   3'- cCUUUaCGCCGcaCG----GCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 206681 0.66 0.896398
Target:  5'- -----aGCGGUGcGCagcaGGUCGCCGUCc -3'
miRNA:   3'- ccuuuaCGCCGCaCGg---CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 129153 0.66 0.896398
Target:  5'- aGGcAAacCGGCGccGCUGGCCACcCGCg -3'
miRNA:   3'- -CCuUUacGCCGCa-CGGCCGGUG-GCGg -5'
30186 5' -59.1 NC_006273.1 + 13574 0.66 0.896398
Target:  5'- -cGGGUGCucacccgccgGGCG-GCCcgGGCCGCCGUg -3'
miRNA:   3'- ccUUUACG----------CCGCaCGG--CCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 81757 0.66 0.896398
Target:  5'- cGGAGccggGCuGCGaacgcugacGCCGGCCACcCGCg -3'
miRNA:   3'- -CCUUua--CGcCGCa--------CGGCCGGUG-GCGg -5'
30186 5' -59.1 NC_006273.1 + 188398 0.66 0.896398
Target:  5'- cGGGGAcGCGGUGgGUCGGUUucucuuaCGCCg -3'
miRNA:   3'- -CCUUUaCGCCGCaCGGCCGGug-----GCGG- -5'
30186 5' -59.1 NC_006273.1 + 138035 0.66 0.896398
Target:  5'- -----gGCGGCGccggcGCCuGGUUGCUGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa----CGG-CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 8316 0.66 0.896398
Target:  5'- -----cGCGGCGcaccaaUGCCGaauccaagagccGCCguGCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGC------ACGGC------------CGG--UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 87881 0.66 0.896398
Target:  5'- -----aGCGaGCGgGCCGccGCUAUCGCCa -3'
miRNA:   3'- ccuuuaCGC-CGCaCGGC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 148693 0.66 0.895779
Target:  5'- uGGAGcuccucgucgccuAUGCGGCaucucGCCGGUgGCgCGUCa -3'
miRNA:   3'- -CCUU-------------UACGCCGca---CGGCCGgUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 68068 0.66 0.890122
Target:  5'- -----cGUGGCc-GCCGcuGCCGCCGCUg -3'
miRNA:   3'- ccuuuaCGCCGcaCGGC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 26938 0.66 0.890122
Target:  5'- -----cGUGGUGUGUCGGCaCGCUGggaCCa -3'
miRNA:   3'- ccuuuaCGCCGCACGGCCG-GUGGC---GG- -5'
30186 5' -59.1 NC_006273.1 + 123515 0.66 0.890122
Target:  5'- ----cUGUGG-GUGgCGuGCCACCGCa -3'
miRNA:   3'- ccuuuACGCCgCACgGC-CGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 80420 0.66 0.890122
Target:  5'- uGGug--GCGGcCGUGCUGGCCggauuguugugaGaaGCCg -3'
miRNA:   3'- -CCuuuaCGCC-GCACGGCCGG------------UggCGG- -5'
30186 5' -59.1 NC_006273.1 + 80460 0.66 0.890122
Target:  5'- gGGAAAggcgGCGGCGUacuGCCGcuuaaaacCCACgGCg -3'
miRNA:   3'- -CCUUUa---CGCCGCA---CGGCc-------GGUGgCGg -5'
30186 5' -59.1 NC_006273.1 + 162228 0.66 0.890122
Target:  5'- aGGAA--GCGGCGguagaaacGUCGcaGCCACCGgCg -3'
miRNA:   3'- -CCUUuaCGCCGCa-------CGGC--CGGUGGCgG- -5'
30186 5' -59.1 NC_006273.1 + 44802 0.66 0.890122
Target:  5'- uGGGcgccgGCGGaCGUGaCuCGGCaGCCGCUg -3'
miRNA:   3'- -CCUuua--CGCC-GCAC-G-GCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 124137 0.66 0.890122
Target:  5'- -uGGcgGCGGCauuugccgcuGUGUCGGCUgcuauuGCUGCCa -3'
miRNA:   3'- ccUUuaCGCCG----------CACGGCCGG------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.