miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 71562 0.66 0.867994
Target:  5'- cGAcGUGaCGGUGUuuuucgucccgcuuGuuGGCCACCGUg -3'
miRNA:   3'- cCUuUAC-GCCGCA--------------CggCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 22130 0.66 0.883644
Target:  5'- gGGAGAagccucUGCGGUagcGgCGGCgGCCGUCu -3'
miRNA:   3'- -CCUUU------ACGCCGca-CgGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 124137 0.66 0.890122
Target:  5'- -uGGcgGCGGCauuugccgcuGUGUCGGCUgcuauuGCUGCCa -3'
miRNA:   3'- ccUUuaCGCCG----------CACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 138150 0.66 0.876966
Target:  5'- -----cGCGGCucaugGCggCGGCCACgGCCu -3'
miRNA:   3'- ccuuuaCGCCGca---CG--GCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 187345 0.66 0.883644
Target:  5'- -----aGCGGC--GCC-GUCACCGCCa -3'
miRNA:   3'- ccuuuaCGCCGcaCGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 196345 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 158768 0.66 0.870094
Target:  5'- -------aGGCc-GCCGGCCGCgGCCa -3'
miRNA:   3'- ccuuuacgCCGcaCGGCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 150904 0.66 0.876966
Target:  5'- cGAAGUGCaGCagguUGUCGGCCuugacgauGCCGCa -3'
miRNA:   3'- cCUUUACGcCGc---ACGGCCGG--------UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 144442 0.66 0.876966
Target:  5'- cGGGug-GCGGCG-GCUcgcacuacacgGGCuCGCgCGCCg -3'
miRNA:   3'- -CCUuuaCGCCGCaCGG-----------CCG-GUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 144764 0.66 0.876966
Target:  5'- cGGAGGcacgacGCGGCG-GCCguGGCC-UCGCUg -3'
miRNA:   3'- -CCUUUa-----CGCCGCaCGG--CCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 77021 0.66 0.883644
Target:  5'- -----aGCGGCGUGC--GCaCGCCGCg -3'
miRNA:   3'- ccuuuaCGCCGCACGgcCG-GUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 7650 0.66 0.872866
Target:  5'- -----gGCGGCGaagacagcugcgauuUGUCGGCCGacaUGCCg -3'
miRNA:   3'- ccuuuaCGCCGC---------------ACGGCCGGUg--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 171267 0.66 0.872866
Target:  5'- cGGAGAUGCGuuugcucuucuucuuGCGagguccggUGCUcGCC-CCGCCg -3'
miRNA:   3'- -CCUUUACGC---------------CGC--------ACGGcCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 140142 0.66 0.876966
Target:  5'- aGAAcgGCGGUGgGUCucgGGCCAaaCGCCg -3'
miRNA:   3'- cCUUuaCGCCGCaCGG---CCGGUg-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 119524 0.66 0.883644
Target:  5'- -uAGGUGCGGguacggauUGUGUCGcGCCACCaCCu -3'
miRNA:   3'- ccUUUACGCC--------GCACGGC-CGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 95242 0.66 0.876966
Target:  5'- aGGcuGUgGCGuGUGUGCUGGCCGauGCg -3'
miRNA:   3'- -CCuuUA-CGC-CGCACGGCCGGUggCGg -5'
30186 5' -59.1 NC_006273.1 + 130385 0.66 0.883644
Target:  5'- cGGAGuuuuucgGUcGCGUGCUGGCUcaGCUGCa -3'
miRNA:   3'- -CCUUua-----CGcCGCACGGCCGG--UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 99353 0.66 0.896398
Target:  5'- cGGAAcGCGGCccGCggauCGGCCAgCGCUg -3'
miRNA:   3'- cCUUUaCGCCGcaCG----GCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 80420 0.66 0.890122
Target:  5'- uGGug--GCGGcCGUGCUGGCCggauuguugugaGaaGCCg -3'
miRNA:   3'- -CCuuuaCGCC-GCACGGCCGG------------UggCGG- -5'
30186 5' -59.1 NC_006273.1 + 8039 0.66 0.876966
Target:  5'- cGAGAcGCGGCGacGCCucuCCACgGCCg -3'
miRNA:   3'- cCUUUaCGCCGCa-CGGcc-GGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.