miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 1452 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 124137 0.66 0.890122
Target:  5'- -uGGcgGCGGCauuugccgcuGUGUCGGCUgcuauuGCUGCCa -3'
miRNA:   3'- ccUUuaCGCCG----------CACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 129153 0.66 0.896398
Target:  5'- aGGcAAacCGGCGccGCUGGCCACcCGCg -3'
miRNA:   3'- -CCuUUacGCCGCa-CGGCCGGUG-GCGg -5'
30186 5' -59.1 NC_006273.1 + 187345 0.66 0.883644
Target:  5'- -----aGCGGC--GCC-GUCACCGCCa -3'
miRNA:   3'- ccuuuaCGCCGcaCGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 158768 0.66 0.870094
Target:  5'- -------aGGCc-GCCGGCCGCgGCCa -3'
miRNA:   3'- ccuuuacgCCGcaCGGCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 70839 0.66 0.870094
Target:  5'- -----cGCuGGCGgGCCGaCCGCCGCg -3'
miRNA:   3'- ccuuuaCG-CCGCaCGGCcGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 119524 0.66 0.883644
Target:  5'- -uAGGUGCGGguacggauUGUGUCGcGCCACCaCCu -3'
miRNA:   3'- ccUUUACGCC--------GCACGGC-CGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 80420 0.66 0.890122
Target:  5'- uGGug--GCGGcCGUGCUGGCCggauuguugugaGaaGCCg -3'
miRNA:   3'- -CCuuuaCGCC-GCACGGCCGG------------UggCGG- -5'
30186 5' -59.1 NC_006273.1 + 206681 0.66 0.896398
Target:  5'- -----aGCGGUGcGCagcaGGUCGCCGUCc -3'
miRNA:   3'- ccuuuaCGCCGCaCGg---CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 144442 0.66 0.876966
Target:  5'- cGGGug-GCGGCG-GCUcgcacuacacgGGCuCGCgCGCCg -3'
miRNA:   3'- -CCUuuaCGCCGCaCGG-----------CCG-GUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 171267 0.66 0.872866
Target:  5'- cGGAGAUGCGuuugcucuucuucuuGCGagguccggUGCUcGCC-CCGCCg -3'
miRNA:   3'- -CCUUUACGC---------------CGC--------ACGGcCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 130385 0.66 0.883644
Target:  5'- cGGAGuuuuucgGUcGCGUGCUGGCUcaGCUGCa -3'
miRNA:   3'- -CCUUua-----CGcCGCACGGCCGG--UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 20514 0.66 0.876966
Target:  5'- -----aGCGGCuuuGUGCCGaGaCCGUCGCCa -3'
miRNA:   3'- ccuuuaCGCCG---CACGGC-C-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 117414 0.66 0.870094
Target:  5'- ---cGUGCccGGcCGUGCuCGGCC-UCGCCu -3'
miRNA:   3'- ccuuUACG--CC-GCACG-GCCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 18810 0.66 0.870094
Target:  5'- cGGAuugcGCGGCGagUGUCGGUUggaggaGCUGCCc -3'
miRNA:   3'- -CCUuua-CGCCGC--ACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 140142 0.66 0.876966
Target:  5'- aGAAcgGCGGUGgGUCucgGGCCAaaCGCCg -3'
miRNA:   3'- cCUUuaCGCCGCaCGG---CCGGUg-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 149498 0.66 0.889483
Target:  5'- cGGGAcauUGCGGUGgcgcuuguUGCgCGGgcugcgucgucacUCACCGCCa -3'
miRNA:   3'- -CCUUu--ACGCCGC--------ACG-GCC-------------GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 103311 0.66 0.876288
Target:  5'- aGGGAucuUGUGGgcuuccaCGUGCCGaCaCACCGUCa -3'
miRNA:   3'- -CCUUu--ACGCC-------GCACGGCcG-GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 178954 0.66 0.876966
Target:  5'- -aAAGUGCGGCuagagcGUgGGCCGCgUGCCu -3'
miRNA:   3'- ccUUUACGCCGca----CGgCCGGUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 8039 0.66 0.876966
Target:  5'- cGAGAcGCGGCGacGCCucuCCACgGCCg -3'
miRNA:   3'- cCUUUaCGCCGCa-CGGcc-GGUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.