miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 171267 0.66 0.872866
Target:  5'- cGGAGAUGCGuuugcucuucuucuuGCGagguccggUGCUcGCC-CCGCCg -3'
miRNA:   3'- -CCUUUACGC---------------CGC--------ACGGcCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 71562 0.66 0.867994
Target:  5'- cGAcGUGaCGGUGUuuuucgucccgcuuGuuGGCCACCGUg -3'
miRNA:   3'- cCUuUAC-GCCGCA--------------CggCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 140142 0.66 0.876966
Target:  5'- aGAAcgGCGGUGgGUCucgGGCCAaaCGCCg -3'
miRNA:   3'- cCUUuaCGCCGCaCGG---CCGGUg-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 158768 0.66 0.870094
Target:  5'- -------aGGCc-GCCGGCCGCgGCCa -3'
miRNA:   3'- ccuuuacgCCGcaCGGCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 77021 0.66 0.883644
Target:  5'- -----aGCGGCGUGC--GCaCGCCGCg -3'
miRNA:   3'- ccuuuaCGCCGCACGgcCG-GUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 80420 0.66 0.890122
Target:  5'- uGGug--GCGGcCGUGCUGGCCggauuguugugaGaaGCCg -3'
miRNA:   3'- -CCuuuaCGCC-GCACGGCCGG------------UggCGG- -5'
30186 5' -59.1 NC_006273.1 + 1452 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 129153 0.66 0.896398
Target:  5'- aGGcAAacCGGCGccGCUGGCCACcCGCg -3'
miRNA:   3'- -CCuUUacGCCGCa-CGGCCGGUG-GCGg -5'
30186 5' -59.1 NC_006273.1 + 99353 0.66 0.896398
Target:  5'- cGGAAcGCGGCccGCggauCGGCCAgCGCUg -3'
miRNA:   3'- cCUUUaCGCCGcaCG----GCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 44802 0.66 0.890122
Target:  5'- uGGGcgccgGCGGaCGUGaCuCGGCaGCCGCUg -3'
miRNA:   3'- -CCUuua--CGCC-GCAC-G-GCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 124137 0.66 0.890122
Target:  5'- -uGGcgGCGGCauuugccgcuGUGUCGGCUgcuauuGCUGCCa -3'
miRNA:   3'- ccUUuaCGCCG----------CACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 206681 0.66 0.896398
Target:  5'- -----aGCGGUGcGCagcaGGUCGCCGUCc -3'
miRNA:   3'- ccuuuaCGCCGCaCGg---CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 138035 0.66 0.896398
Target:  5'- -----gGCGGCGccggcGCCuGGUUGCUGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa----CGG-CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 81757 0.66 0.896398
Target:  5'- cGGAGccggGCuGCGaacgcugacGCCGGCCACcCGCg -3'
miRNA:   3'- -CCUUua--CGcCGCa--------CGGCCGGUG-GCGg -5'
30186 5' -59.1 NC_006273.1 + 8316 0.66 0.896398
Target:  5'- -----cGCGGCGcaccaaUGCCGaauccaagagccGCCguGCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGC------ACGGC------------CGG--UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 149498 0.66 0.889483
Target:  5'- cGGGAcauUGCGGUGgcgcuuguUGCgCGGgcugcgucgucacUCACCGCCa -3'
miRNA:   3'- -CCUUu--ACGCCGC--------ACG-GCC-------------GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 172196 0.67 0.832974
Target:  5'- cGGAGGcaaaGGCGaggccgcGCCGGCCG-CGCCg -3'
miRNA:   3'- -CCUUUacg-CCGCa------CGGCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 89351 0.67 0.832974
Target:  5'- cGGAGuccUG-GGUGUGUCgGGCCGCgGCa -3'
miRNA:   3'- -CCUUu--ACgCCGCACGG-CCGGUGgCGg -5'
30186 5' -59.1 NC_006273.1 + 97343 0.67 0.825037
Target:  5'- cGGGAcGCGGCagcaaccagGcGCCGG-CGCCGCCu -3'
miRNA:   3'- cCUUUaCGCCG---------CaCGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 190926 0.67 0.839206
Target:  5'- aGGAAAgcGCGGCGguccagcaacugGCCgcGGaaaCACUGCCg -3'
miRNA:   3'- -CCUUUa-CGCCGCa-----------CGG--CCg--GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.