miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 55454 0.75 0.39759
Target:  5'- uGAGucggGCGGUG-GCCGGCaCGCCGCa -3'
miRNA:   3'- cCUUua--CGCCGCaCGGCCG-GUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 198618 0.75 0.405667
Target:  5'- uGGGccu-CGGCGUGCUcaGGCCAcCCGCCg -3'
miRNA:   3'- -CCUuuacGCCGCACGG--CCGGU-GGCGG- -5'
30186 5' -59.1 NC_006273.1 + 30897 0.75 0.405667
Target:  5'- cGGGuuUGgGGaCGUGuCCGGCUACCGUg -3'
miRNA:   3'- -CCUuuACgCC-GCAC-GGCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 228730 0.75 0.408926
Target:  5'- -cGAGUGCGGUcgGUGUCucaucggugagacgaGGCCGCCGCCc -3'
miRNA:   3'- ccUUUACGCCG--CACGG---------------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 26304 0.75 0.421293
Target:  5'- -aAGAUGCGGUGUGuuGGCUacgucggACCGCg -3'
miRNA:   3'- ccUUUACGCCGCACggCCGG-------UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 47471 0.75 0.422125
Target:  5'- uGGAugGAUGCGGUacauGUGgCGGUCcaaGCCGCCg -3'
miRNA:   3'- -CCU--UUACGCCG----CACgGCCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 39597 0.75 0.430504
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCaugGCCGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 34680 0.75 0.433882
Target:  5'- uGGGAUGUuugggcgccGGCGUuuuccuuuucugaccGCCGGCgGCCGCCa -3'
miRNA:   3'- cCUUUACG---------CCGCA---------------CGGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 71641 0.74 0.438979
Target:  5'- aGGAagacgacgacGAUGCGGCcugccGCCGGCuguuucuacCACCGCCa -3'
miRNA:   3'- -CCU----------UUACGCCGca---CGGCCG---------GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 73740 0.74 0.447548
Target:  5'- uGGGug-GCGGCGgcgGCCgaGGCCcggcagcggcGCCGCCa -3'
miRNA:   3'- -CCUuuaCGCCGCa--CGG--CCGG----------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 45893 0.74 0.45621
Target:  5'- -----cGCGGCG-GCCgGGCCGCCgagGCCg -3'
miRNA:   3'- ccuuuaCGCCGCaCGG-CCGGUGG---CGG- -5'
30186 5' -59.1 NC_006273.1 + 93580 0.74 0.464961
Target:  5'- uGAGcgGCGGCGgccUGCgCGGCCuguACCGCg -3'
miRNA:   3'- cCUUuaCGCCGC---ACG-GCCGG---UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 234490 0.74 0.473799
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCAUgGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 199478 0.74 0.477358
Target:  5'- -----gGCGGgucguuggcucccgcUGUGCUGGCCGCCGCUg -3'
miRNA:   3'- ccuuuaCGCC---------------GCACGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 17162 0.73 0.489013
Target:  5'- aGGAAacgacggccgcgccAUGcCGGuCGUccgccGUCGGCCGCCGCCc -3'
miRNA:   3'- -CCUU--------------UAC-GCC-GCA-----CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 37138 0.73 0.491722
Target:  5'- cGGAGGUGCuGGCG-GCCguGGCCugUgGCCc -3'
miRNA:   3'- -CCUUUACG-CCGCaCGG--CCGGugG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 117165 0.73 0.491722
Target:  5'- -----gGCGGCGUGCguuauuaaagCGGCguCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCACG----------GCCGguGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 93230 0.73 0.491722
Target:  5'- aGAGAgcGCGGCGUacGCUGGUCACguCGCCg -3'
miRNA:   3'- cCUUUa-CGCCGCA--CGGCCGGUG--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 189870 0.73 0.491722
Target:  5'- gGGAGAcGCgucgGGCGgaccGCCGGgCAUCGCCg -3'
miRNA:   3'- -CCUUUaCG----CCGCa---CGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 101348 0.73 0.504452
Target:  5'- uGGAGGgcaacaccaaccagGCGGCG-GCCGuGCgCAUCGCCu -3'
miRNA:   3'- -CCUUUa-------------CGCCGCaCGGC-CG-GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.