miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 80460 0.66 0.890122
Target:  5'- gGGAAAggcgGCGGCGUacuGCCGcuuaaaacCCACgGCg -3'
miRNA:   3'- -CCUUUa---CGCCGCA---CGGCc-------GGUGgCGg -5'
30186 5' -59.1 NC_006273.1 + 149498 0.66 0.889483
Target:  5'- cGGGAcauUGCGGUGgcgcuuguUGCgCGGgcugcgucgucacUCACCGCCa -3'
miRNA:   3'- -CCUUu--ACGCCGC--------ACG-GCC-------------GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 85740 0.66 0.888199
Target:  5'- -----gGCGGCGUGgaGGgagaaacccgaucaCUACCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCACggCC--------------GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 68095 0.66 0.886259
Target:  5'- cGGAGUGCccguCGccgcaaaccccgucaUGCCcGCCACCGCCa -3'
miRNA:   3'- cCUUUACGcc--GC---------------ACGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 198961 0.66 0.883644
Target:  5'- cGGAuucucUGCGGCGacaCGGgCACCGUg -3'
miRNA:   3'- -CCUuu---ACGCCGCacgGCCgGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 22130 0.66 0.883644
Target:  5'- gGGAGAagccucUGCGGUagcGgCGGCgGCCGUCu -3'
miRNA:   3'- -CCUUU------ACGCCGca-CgGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 119524 0.66 0.883644
Target:  5'- -uAGGUGCGGguacggauUGUGUCGcGCCACCaCCu -3'
miRNA:   3'- ccUUUACGCC--------GCACGGC-CGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 187345 0.66 0.883644
Target:  5'- -----aGCGGC--GCC-GUCACCGCCa -3'
miRNA:   3'- ccuuuaCGCCGcaCGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 77021 0.66 0.883644
Target:  5'- -----aGCGGCGUGC--GCaCGCCGCg -3'
miRNA:   3'- ccuuuaCGCCGCACGgcCG-GUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 130385 0.66 0.883644
Target:  5'- cGGAGuuuuucgGUcGCGUGCUGGCUcaGCUGCa -3'
miRNA:   3'- -CCUUua-----CGcCGCACGGCCGG--UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 157231 0.66 0.882324
Target:  5'- -----cGCGGCGcuugcacuuggaGCCGGCUuuuCUGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa-----------CGGCCGGu--GGCGG- -5'
30186 5' -59.1 NC_006273.1 + 8039 0.66 0.876966
Target:  5'- cGAGAcGCGGCGacGCCucuCCACgGCCg -3'
miRNA:   3'- cCUUUaCGCCGCa-CGGcc-GGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 113276 0.66 0.876966
Target:  5'- -----cGCGGCGauacGCCGG-UGCUGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa---CGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 144442 0.66 0.876966
Target:  5'- cGGGug-GCGGCG-GCUcgcacuacacgGGCuCGCgCGCCg -3'
miRNA:   3'- -CCUuuaCGCCGCaCGG-----------CCG-GUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 140142 0.66 0.876966
Target:  5'- aGAAcgGCGGUGgGUCucgGGCCAaaCGCCg -3'
miRNA:   3'- cCUUuaCGCCGCaCGG---CCGGUg-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 214755 0.66 0.876966
Target:  5'- cGGAGcaccGUGG-GUGCCGGCgguaugAUCGCCa -3'
miRNA:   3'- -CCUUua--CGCCgCACGGCCGg-----UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 138150 0.66 0.876966
Target:  5'- -----cGCGGCucaugGCggCGGCCACgGCCu -3'
miRNA:   3'- ccuuuaCGCCGca---CG--GCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 144764 0.66 0.876966
Target:  5'- cGGAGGcacgacGCGGCG-GCCguGGCC-UCGCUg -3'
miRNA:   3'- -CCUUUa-----CGCCGCaCGG--CCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 178954 0.66 0.876966
Target:  5'- -aAAGUGCGGCuagagcGUgGGCCGCgUGCCu -3'
miRNA:   3'- ccUUUACGCCGca----CGgCCGGUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 20514 0.66 0.876966
Target:  5'- -----aGCGGCuuuGUGCCGaGaCCGUCGCCa -3'
miRNA:   3'- ccuuuaCGCCG---CACGGC-C-GGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.