miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 150904 0.66 0.876966
Target:  5'- cGAAGUGCaGCagguUGUCGGCCuugacgauGCCGCa -3'
miRNA:   3'- cCUUUACGcCGc---ACGGCCGG--------UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 113276 0.66 0.876966
Target:  5'- -----cGCGGCGauacGCCGG-UGCUGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa---CGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 145662 0.66 0.876966
Target:  5'- gGGAauGAUGgGGCGcGgCGGUCGCaUGCUg -3'
miRNA:   3'- -CCU--UUACgCCGCaCgGCCGGUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 103311 0.66 0.876288
Target:  5'- aGGGAucuUGUGGgcuuccaCGUGCCGaCaCACCGUCa -3'
miRNA:   3'- -CCUUu--ACGCC-------GCACGGCcG-GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 133284 0.66 0.874925
Target:  5'- cGGAcuugcaGCGGCucgucgucacccgcGUG-UGGCCGCCGCUg -3'
miRNA:   3'- -CCUuua---CGCCG--------------CACgGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 7650 0.66 0.872866
Target:  5'- -----gGCGGCGaagacagcugcgauuUGUCGGCCGacaUGCCg -3'
miRNA:   3'- ccuuuaCGCCGC---------------ACGGCCGGUg--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 171267 0.66 0.872866
Target:  5'- cGGAGAUGCGuuugcucuucuucuuGCGagguccggUGCUcGCC-CCGCCg -3'
miRNA:   3'- -CCUUUACGC---------------CGC--------ACGGcCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 158768 0.66 0.870094
Target:  5'- -------aGGCc-GCCGGCCGCgGCCa -3'
miRNA:   3'- ccuuuacgCCGcaCGGCCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 196345 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 70839 0.66 0.870094
Target:  5'- -----cGCuGGCGgGCCGaCCGCCGCg -3'
miRNA:   3'- ccuuuaCG-CCGCaCGGCcGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 117414 0.66 0.870094
Target:  5'- ---cGUGCccGGcCGUGCuCGGCC-UCGCCu -3'
miRNA:   3'- ccuuUACG--CC-GCACG-GCCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 18810 0.66 0.870094
Target:  5'- cGGAuugcGCGGCGagUGUCGGUUggaggaGCUGCCc -3'
miRNA:   3'- -CCUuua-CGCCGC--ACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 20447 0.66 0.870094
Target:  5'- -----cGCGGCGUGaCCacGUCACCGUg -3'
miRNA:   3'- ccuuuaCGCCGCAC-GGc-CGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 1452 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 46943 0.66 0.870094
Target:  5'- uGGGAAUGUcgacuacgGGUGUGgUGGCUGagugaCGCCg -3'
miRNA:   3'- -CCUUUACG--------CCGCACgGCCGGUg----GCGG- -5'
30186 5' -59.1 NC_006273.1 + 71562 0.66 0.867994
Target:  5'- cGAcGUGaCGGUGUuuuucgucccgcuuGuuGGCCACCGUg -3'
miRNA:   3'- cCUuUAC-GCCGCA--------------CggCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 192160 0.67 0.86303
Target:  5'- -----aGCGcCGUaGCCGGCCcGCCuGCCg -3'
miRNA:   3'- ccuuuaCGCcGCA-CGGCCGG-UGG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 2392 0.67 0.86303
Target:  5'- ----cUGgGGCGcgaGUCGGCgccCGCCGCCg -3'
miRNA:   3'- ccuuuACgCCGCa--CGGCCG---GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 75391 0.67 0.86303
Target:  5'- cGGAAgaaaccacGUGCGGCG-GCaCGcaauCCACCGUa -3'
miRNA:   3'- -CCUU--------UACGCCGCaCG-GCc---GGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 103205 0.67 0.86303
Target:  5'- cGGAAAgagGCuGCGaUGCCagguuucggaGGCCACgGCg -3'
miRNA:   3'- -CCUUUa--CGcCGC-ACGG----------CCGGUGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.