miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 759 0.72 0.579531
Target:  5'- ----uUGCGGCGUGCUGuguccggcgcuuuguGCgCACUGCCg -3'
miRNA:   3'- ccuuuACGCCGCACGGC---------------CG-GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 870 0.67 0.86303
Target:  5'- cGGAGGUGUccGGCG-GCCauGGCCcAgCGCa -3'
miRNA:   3'- -CCUUUACG--CCGCaCGG--CCGG-UgGCGg -5'
30186 5' -59.1 NC_006273.1 + 943 0.68 0.77437
Target:  5'- cGGcGAcgGCguuguuuucgGGCGUGCUGGgCGCCGgCg -3'
miRNA:   3'- -CC-UUuaCG----------CCGCACGGCCgGUGGCgG- -5'
30186 5' -59.1 NC_006273.1 + 1452 0.66 0.870094
Target:  5'- --cGGUG-GGCGacaagGCCGGCCAUC-CCg -3'
miRNA:   3'- ccuUUACgCCGCa----CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 1959 0.7 0.709283
Target:  5'- uGGGuugcGCGGCGggGCCGGCgACggggacgacgucgCGCCa -3'
miRNA:   3'- -CCUuua-CGCCGCa-CGGCCGgUG-------------GCGG- -5'
30186 5' -59.1 NC_006273.1 + 2231 0.72 0.566163
Target:  5'- cGGGuccgGCGGCGUcgggGaCCGuGCCGCgCGCCa -3'
miRNA:   3'- -CCUuua-CGCCGCA----C-GGC-CGGUG-GCGG- -5'
30186 5' -59.1 NC_006273.1 + 2392 0.67 0.86303
Target:  5'- ----cUGgGGCGcgaGUCGGCgccCGCCGCCg -3'
miRNA:   3'- ccuuuACgCCGCa--CGGCCG---GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 6912 0.67 0.86303
Target:  5'- aGAAA--CGGCGUGCa-GCCGCCgaGCCc -3'
miRNA:   3'- cCUUUacGCCGCACGgcCGGUGG--CGG- -5'
30186 5' -59.1 NC_006273.1 + 7650 0.66 0.872866
Target:  5'- -----gGCGGCGaagacagcugcgauuUGUCGGCCGacaUGCCg -3'
miRNA:   3'- ccuuuaCGCCGC---------------ACGGCCGGUg--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 7695 0.7 0.710227
Target:  5'- uGGGcgGCGGCG-GCaguGGCCGCgGCa -3'
miRNA:   3'- cCUUuaCGCCGCaCGg--CCGGUGgCGg -5'
30186 5' -59.1 NC_006273.1 + 8039 0.66 0.876966
Target:  5'- cGAGAcGCGGCGacGCCucuCCACgGCCg -3'
miRNA:   3'- cCUUUaCGCCGCa-CGGcc-GGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 8316 0.66 0.896398
Target:  5'- -----cGCGGCGcaccaaUGCCGaauccaagagccGCCguGCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGC------ACGGC------------CGG--UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 13574 0.66 0.896398
Target:  5'- -cGGGUGCucacccgccgGGCG-GCCcgGGCCGCCGUg -3'
miRNA:   3'- ccUUUACG----------CCGCaCGG--CCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 17162 0.73 0.489013
Target:  5'- aGGAAacgacggccgcgccAUGcCGGuCGUccgccGUCGGCCGCCGCCc -3'
miRNA:   3'- -CCUU--------------UAC-GCC-GCA-----CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 17385 0.7 0.6721
Target:  5'- gGGGAAgacGCGGU-UGCCgcgcguauGGCCGCCgGCCa -3'
miRNA:   3'- -CCUUUa--CGCCGcACGG--------CCGGUGG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 17608 0.68 0.816943
Target:  5'- -----aGCGGUaUGCUcGCCGCCGCUu -3'
miRNA:   3'- ccuuuaCGCCGcACGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 17687 0.67 0.840748
Target:  5'- -----gGCGGCGcGUCccacccccugGGCCACCaGCCg -3'
miRNA:   3'- ccuuuaCGCCGCaCGG----------CCGGUGG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 18521 0.69 0.738227
Target:  5'- aGGGccUGCGcGCcUGCCGGCCuuuugaccacauGCCgGCCg -3'
miRNA:   3'- -CCUuuACGC-CGcACGGCCGG------------UGG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 18810 0.66 0.870094
Target:  5'- cGGAuugcGCGGCGagUGUCGGUUggaggaGCUGCCc -3'
miRNA:   3'- -CCUuua-CGCCGC--ACGGCCGG------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 19673 0.67 0.86303
Target:  5'- cGAAucuCGGCGauaaccGCCGGCguuGCCGCCa -3'
miRNA:   3'- cCUUuacGCCGCa-----CGGCCGg--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.