miRNA display CGI


Results 21 - 40 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 20447 0.66 0.870094
Target:  5'- -----cGCGGCGUGaCCacGUCACCGUg -3'
miRNA:   3'- ccuuuaCGCCGCAC-GGc-CGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 20514 0.66 0.876966
Target:  5'- -----aGCGGCuuuGUGCCGaGaCCGUCGCCa -3'
miRNA:   3'- ccuuuaCGCCG---CACGGC-C-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 21204 0.79 0.253111
Target:  5'- aGGu-AUGgGGgGUgGCCGGCUGCCGCCg -3'
miRNA:   3'- -CCuuUACgCCgCA-CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 22130 0.66 0.883644
Target:  5'- gGGAGAagccucUGCGGUagcGgCGGCgGCCGUCu -3'
miRNA:   3'- -CCUUU------ACGCCGca-CgGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 26304 0.75 0.421293
Target:  5'- -aAGAUGCGGUGUGuuGGCUacgucggACCGCg -3'
miRNA:   3'- ccUUUACGCCGCACggCCGG-------UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 26938 0.66 0.890122
Target:  5'- -----cGUGGUGUGUCGGCaCGCUGggaCCa -3'
miRNA:   3'- ccuuuaCGCCGCACGGCCG-GUGGC---GG- -5'
30186 5' -59.1 NC_006273.1 + 28568 0.67 0.840748
Target:  5'- uGGAuGUGCauGCa-GCCGGCCAgCGCUc -3'
miRNA:   3'- -CCUuUACGc-CGcaCGGCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 30596 0.68 0.8087
Target:  5'- cGAGAccgGCGGCa--CCGG-CGCCGCCa -3'
miRNA:   3'- cCUUUa--CGCCGcacGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 30670 0.69 0.747406
Target:  5'- -----gGCGGCuuccugcgGCCGGCCGCggUGCCg -3'
miRNA:   3'- ccuuuaCGCCGca------CGGCCGGUG--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 30897 0.75 0.405667
Target:  5'- cGGGuuUGgGGaCGUGuCCGGCUACCGUg -3'
miRNA:   3'- -CCUuuACgCC-GCAC-GGCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 34680 0.75 0.433882
Target:  5'- uGGGAUGUuugggcgccGGCGUuuuccuuuucugaccGCCGGCgGCCGCCa -3'
miRNA:   3'- cCUUUACG---------CCGCA---------------CGGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 37038 0.69 0.747406
Target:  5'- -cGAGUGCGGCGaaUGCUcGCCcCCGaCCa -3'
miRNA:   3'- ccUUUACGCCGC--ACGGcCGGuGGC-GG- -5'
30186 5' -59.1 NC_006273.1 + 37138 0.73 0.491722
Target:  5'- cGGAGGUGCuGGCG-GCCguGGCCugUgGCCc -3'
miRNA:   3'- -CCUUUACG-CCGCaCGG--CCGGugG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 38313 0.69 0.71963
Target:  5'- -----cGuCGGCGccgccgcugcUGCCGcuGCCGCCGCCg -3'
miRNA:   3'- ccuuuaC-GCCGC----------ACGGC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 38518 0.73 0.522879
Target:  5'- -----gGCGGCGacgucguccccgucGCCGGCC-CCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa-------------CGGCCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 38651 0.67 0.82343
Target:  5'- cGggGUGCGGCGccgacgcgaacgGCuCGuaCugCGCCa -3'
miRNA:   3'- cCuuUACGCCGCa-----------CG-GCcgGugGCGG- -5'
30186 5' -59.1 NC_006273.1 + 38745 0.76 0.373991
Target:  5'- --uAGUGCcaccGuCGUGCCGGcCCACCGCCg -3'
miRNA:   3'- ccuUUACGc---C-GCACGGCC-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 39597 0.75 0.430504
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCaugGCCGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 39761 0.68 0.77437
Target:  5'- cGAcGUGUauGGCGcuUGCUGG-CGCCGCCu -3'
miRNA:   3'- cCUuUACG--CCGC--ACGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 39828 0.68 0.8087
Target:  5'- cGGGGcucagcGUGUGGCGcGgCGGCgaGCCGCUc -3'
miRNA:   3'- -CCUU------UACGCCGCaCgGCCGg-UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.