miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 234653 0.68 0.77437
Target:  5'- cGAcGUGUauGGCGcuUGCUGG-CGCCGCCu -3'
miRNA:   3'- cCUuUACG--CCGC--ACGGCCgGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 234490 0.74 0.473799
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCAUgGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 233652 0.68 0.816943
Target:  5'- cGAAGUcGCuuGCGcUGUCGGCCcagucgccACCGCCg -3'
miRNA:   3'- cCUUUA-CGc-CGC-ACGGCCGG--------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 233637 0.76 0.373991
Target:  5'- --uAGUGCcaccGuCGUGCCGGcCCACCGCCg -3'
miRNA:   3'- ccuUUACGc---C-GCACGGCC-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 233543 0.67 0.82343
Target:  5'- cGggGUGCGGCGccgacgcgaacgGCuCGuaCugCGCCa -3'
miRNA:   3'- cCuuUACGCCGCa-----------CG-GCcgGugGCGG- -5'
30186 5' -59.1 NC_006273.1 + 233411 0.73 0.522879
Target:  5'- -----gGCGGCGacgucguccccgucGCCGGCC-CCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa-------------CGGCCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 233206 0.69 0.71963
Target:  5'- -----cGuCGGCGccgccgcugcUGCCGcuGCCGCCGCCg -3'
miRNA:   3'- ccuuuaC-GCCGC----------ACGGC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 232042 0.67 0.855781
Target:  5'- --cGAUGCGGUGUGCCuGUCGgUGUa -3'
miRNA:   3'- ccuUUACGCCGCACGGcCGGUgGCGg -5'
30186 5' -59.1 NC_006273.1 + 228730 0.75 0.408926
Target:  5'- -cGAGUGCGGUcgGUGUCucaucggugagacgaGGCCGCCGCCc -3'
miRNA:   3'- ccUUUACGCCG--CACGG---------------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 227693 0.72 0.585282
Target:  5'- -----cGCGGCcacUGCC-GCCGCCGCCc -3'
miRNA:   3'- ccuuuaCGCCGc--ACGGcCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 227115 0.69 0.738227
Target:  5'- -----gGCGGCGUGgguaUGcGCCGCUGCCc -3'
miRNA:   3'- ccuuuaCGCCGCACg---GC-CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 221780 0.7 0.700765
Target:  5'- uGGgcGUGgGGCG-GCCcuccagcacggcGGCCcggGCCGCCc -3'
miRNA:   3'- -CCuuUACgCCGCaCGG------------CCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 215695 0.69 0.765486
Target:  5'- cGGAGcgacaugGCGGCaacGCCGGCgguUAUCGCCg -3'
miRNA:   3'- -CCUUua-----CGCCGca-CGGCCG---GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 214755 0.66 0.876966
Target:  5'- cGGAGcaccGUGG-GUGCCGGCgguaugAUCGCCa -3'
miRNA:   3'- -CCUUua--CGCCgCACGGCCGg-----UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 214178 0.77 0.309074
Target:  5'- -----aGCGGCGgcaGCCGGCCACCcCCc -3'
miRNA:   3'- ccuuuaCGCCGCa--CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 213696 0.67 0.848352
Target:  5'- aGGAGcgGUccgaguggcgcaGGuCGUGCacguCGGCCACCagcGCCg -3'
miRNA:   3'- -CCUUuaCG------------CC-GCACG----GCCGGUGG---CGG- -5'
30186 5' -59.1 NC_006273.1 + 213175 0.7 0.662476
Target:  5'- cGGAAAccgagGCGGUGUcGCCcauGCUGCCGCUu -3'
miRNA:   3'- -CCUUUa----CGCCGCA-CGGc--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 213064 0.72 0.547208
Target:  5'- cGGAGucGCGGCGUucGuuGgcGCCGCUGCCg -3'
miRNA:   3'- -CCUUuaCGCCGCA--CggC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 209926 0.71 0.623836
Target:  5'- -----cGCGGUcaaGCCGGCCAgCUGCCa -3'
miRNA:   3'- ccuuuaCGCCGca-CGGCCGGU-GGCGG- -5'
30186 5' -59.1 NC_006273.1 + 207461 0.7 0.700765
Target:  5'- gGGGGAcgauggGUGGUG-GCuaCGaGCCACCGCCa -3'
miRNA:   3'- -CCUUUa-----CGCCGCaCG--GC-CGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.