miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 117165 0.73 0.491722
Target:  5'- -----gGCGGCGUGCguuauuaaagCGGCguCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCACG----------GCCGguGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 65564 0.75 0.389618
Target:  5'- ----cUGCGGCGaaggggcccUGCCGGCCcuggGCCGCUa -3'
miRNA:   3'- ccuuuACGCCGC---------ACGGCCGG----UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 167654 0.75 0.389618
Target:  5'- uGAGcgGCGGCGcaacggcgggGUCGGCCGCCGUUc -3'
miRNA:   3'- cCUUuaCGCCGCa---------CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 198618 0.75 0.405667
Target:  5'- uGGGccu-CGGCGUGCUcaGGCCAcCCGCCg -3'
miRNA:   3'- -CCUuuacGCCGCACGG--CCGGU-GGCGG- -5'
30186 5' -59.1 NC_006273.1 + 228730 0.75 0.408926
Target:  5'- -cGAGUGCGGUcgGUGUCucaucggugagacgaGGCCGCCGCCc -3'
miRNA:   3'- ccUUUACGCCG--CACGG---------------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 34680 0.75 0.433882
Target:  5'- uGGGAUGUuugggcgccGGCGUuuuccuuuucugaccGCCGGCgGCCGCCa -3'
miRNA:   3'- cCUUUACG---------CCGCA---------------CGGCCGgUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 73740 0.74 0.447548
Target:  5'- uGGGug-GCGGCGgcgGCCgaGGCCcggcagcggcGCCGCCa -3'
miRNA:   3'- -CCUuuaCGCCGCa--CGG--CCGG----------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 45893 0.74 0.45621
Target:  5'- -----cGCGGCG-GCCgGGCCGCCgagGCCg -3'
miRNA:   3'- ccuuuaCGCCGCaCGG-CCGGUGG---CGG- -5'
30186 5' -59.1 NC_006273.1 + 234490 0.74 0.473799
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCAUgGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 133246 0.76 0.377082
Target:  5'- aGGAGAUGCugGGCaUGuuGGCCggaaagcccgaggauGCCGCCg -3'
miRNA:   3'- -CCUUUACG--CCGcACggCCGG---------------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 118816 0.76 0.373991
Target:  5'- aGGucguAGUGCGGCGUGCUGcacGCuCACCGUUa -3'
miRNA:   3'- -CCu---UUACGCCGCACGGC---CG-GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 233637 0.76 0.373991
Target:  5'- --uAGUGCcaccGuCGUGCCGGcCCACCGCCg -3'
miRNA:   3'- ccuUUACGc---C-GCACGGCC-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 21204 0.79 0.253111
Target:  5'- aGGu-AUGgGGgGUgGCCGGCUGCCGCCg -3'
miRNA:   3'- -CCuuUACgCCgCA-CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 134012 0.78 0.289431
Target:  5'- cGGAugagGCaGGCGaUGCgcaCGGCCGCCGCCu -3'
miRNA:   3'- -CCUuua-CG-CCGC-ACG---GCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 122250 0.78 0.295868
Target:  5'- -----aGCGGCGcGCCcucugcGGCCGCCGCCu -3'
miRNA:   3'- ccuuuaCGCCGCaCGG------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 105162 0.78 0.301755
Target:  5'- gGGGAAaGCGGCGUccGCgaggacggggaaaCGGUCGCCGCCg -3'
miRNA:   3'- -CCUUUaCGCCGCA--CG-------------GCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 164543 0.77 0.309074
Target:  5'- aGGGAggGCGGCGgcgGUCGGC--CCGCCa -3'
miRNA:   3'- -CCUUuaCGCCGCa--CGGCCGguGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 147810 0.77 0.329717
Target:  5'- uGGGug-GCGGcCGUGCCGaGCCGCgGCUu -3'
miRNA:   3'- -CCUuuaCGCC-GCACGGC-CGGUGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 196851 0.76 0.356552
Target:  5'- uGGGuugcGCGGCGggGCCGGCgacggggacgacguCGCCGCCa -3'
miRNA:   3'- -CCUuua-CGCCGCa-CGGCCG--------------GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 120924 0.76 0.366338
Target:  5'- cGGAAGUGgaGGCGcucGCCauggcGCCGCCGCCg -3'
miRNA:   3'- -CCUUUACg-CCGCa--CGGc----CGGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.