miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30186 5' -59.1 NC_006273.1 + 92229 0.79 0.26419
Target:  5'- uGGGGAUGCGGCGcGCCGuGCCcgucuccugaaagACgGCCa -3'
miRNA:   3'- -CCUUUACGCCGCaCGGC-CGG-------------UGgCGG- -5'
30186 5' -59.1 NC_006273.1 + 101348 0.73 0.504452
Target:  5'- uGGAGGgcaacaccaaccagGCGGCG-GCCGuGCgCAUCGCCu -3'
miRNA:   3'- -CCUUUa-------------CGCCGCaCGGC-CG-GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 38518 0.73 0.522879
Target:  5'- -----gGCGGCGacgucguccccgucGCCGGCC-CCGCCg -3'
miRNA:   3'- ccuuuaCGCCGCa-------------CGGCCGGuGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 99353 0.66 0.896398
Target:  5'- cGGAAcGCGGCccGCggauCGGCCAgCGCUg -3'
miRNA:   3'- cCUUUaCGCCGcaCG----GCCGGUgGCGG- -5'
30186 5' -59.1 NC_006273.1 + 161633 0.76 0.365579
Target:  5'- -----gGCGGCGccgcUGCCgggccucGGCCGCCGCCg -3'
miRNA:   3'- ccuuuaCGCCGC----ACGG-------CCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 38745 0.76 0.373991
Target:  5'- --uAGUGCcaccGuCGUGCCGGcCCACCGCCg -3'
miRNA:   3'- ccuUUACGc---C-GCACGGCC-GGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 30897 0.75 0.405667
Target:  5'- cGGGuuUGgGGaCGUGuCCGGCUACCGUg -3'
miRNA:   3'- -CCUuuACgCC-GCAC-GGCCGGUGGCGg -5'
30186 5' -59.1 NC_006273.1 + 26304 0.75 0.421293
Target:  5'- -aAGAUGCGGUGUGuuGGCUacgucggACCGCg -3'
miRNA:   3'- ccUUUACGCCGCACggCCGG-------UGGCGg -5'
30186 5' -59.1 NC_006273.1 + 71641 0.74 0.438979
Target:  5'- aGGAagacgacgacGAUGCGGCcugccGCCGGCuguuucuacCACCGCCa -3'
miRNA:   3'- -CCU----------UUACGCCGca---CGGCCG---------GUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 93230 0.73 0.491722
Target:  5'- aGAGAgcGCGGCGUacGCUGGUCACguCGCCg -3'
miRNA:   3'- cCUUUa-CGCCGCA--CGGCCGGUG--GCGG- -5'
30186 5' -59.1 NC_006273.1 + 199478 0.74 0.477358
Target:  5'- -----gGCGGgucguuggcucccgcUGUGCUGGCCGCCGCUg -3'
miRNA:   3'- ccuuuaCGCC---------------GCACGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 39597 0.75 0.430504
Target:  5'- gGGggGcGCGGCGacaUGCCguugcgcugGGCCaugGCCGCCg -3'
miRNA:   3'- -CCuuUaCGCCGC---ACGG---------CCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 214178 0.77 0.309074
Target:  5'- -----aGCGGCGgcaGCCGGCCACCcCCc -3'
miRNA:   3'- ccuuuaCGCCGCa--CGGCCGGUGGcGG- -5'
30186 5' -59.1 NC_006273.1 + 17162 0.73 0.489013
Target:  5'- aGGAAacgacggccgcgccAUGcCGGuCGUccgccGUCGGCCGCCGCCc -3'
miRNA:   3'- -CCUU--------------UAC-GCC-GCA-----CGGCCGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 146797 0.76 0.358794
Target:  5'- -----cGCaGGCGUGCCGGCgCccaugGCCGCCa -3'
miRNA:   3'- ccuuuaCG-CCGCACGGCCG-G-----UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 47471 0.75 0.422125
Target:  5'- uGGAugGAUGCGGUacauGUGgCGGUCcaaGCCGCCg -3'
miRNA:   3'- -CCU--UUACGCCG----CACgGCCGG---UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 37138 0.73 0.491722
Target:  5'- cGGAGGUGCuGGCG-GCCguGGCCugUgGCCc -3'
miRNA:   3'- -CCUUUACG-CCGCaCGG--CCGGugG-CGG- -5'
30186 5' -59.1 NC_006273.1 + 173261 0.73 0.519173
Target:  5'- cGGAccaGCGGC-UGCUGGCCcccggaacucgaACCGCCc -3'
miRNA:   3'- -CCUuuaCGCCGcACGGCCGG------------UGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 170098 0.76 0.358794
Target:  5'- aGGAAgGUGCGGCGgugGUCGuuGUCGCUGCCg -3'
miRNA:   3'- -CCUU-UACGCCGCa--CGGC--CGGUGGCGG- -5'
30186 5' -59.1 NC_006273.1 + 55454 0.75 0.39759
Target:  5'- uGAGucggGCGGUG-GCCGGCaCGCCGCa -3'
miRNA:   3'- cCUUua--CGCCGCaCGGCCG-GUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.