miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 111207 0.66 0.881012
Target:  5'- gCCAGacgaGgCGGCGgCGGUGGCGUuGG-Ca -3'
miRNA:   3'- -GGUUg---UgGCCGCgGCCGCUGCA-CCaG- -5'
30187 3' -60 NC_006273.1 + 148652 0.66 0.881012
Target:  5'- cCUGGCGCCGGagGCCGGCcuggaGGUCu -3'
miRNA:   3'- -GGUUGUGGCCg-CGGCCGcugcaCCAG- -5'
30187 3' -60 NC_006273.1 + 185401 0.66 0.881012
Target:  5'- uCCcuCGCCGuCG-CGGcCGACGUGGUg -3'
miRNA:   3'- -GGuuGUGGCcGCgGCC-GCUGCACCAg -5'
30187 3' -60 NC_006273.1 + 7601 0.66 0.881012
Target:  5'- aCAGCGCCaucuccuccuGGagGCCGGCGACGUu--- -3'
miRNA:   3'- gGUUGUGG----------CCg-CGGCCGCUGCAccag -5'
30187 3' -60 NC_006273.1 + 177695 0.66 0.881012
Target:  5'- gCCGACGCUGGCGCU-GCGGC-UGa-- -3'
miRNA:   3'- -GGUUGUGGCCGCGGcCGCUGcACcag -5'
30187 3' -60 NC_006273.1 + 137778 0.66 0.881012
Target:  5'- gCCAcguACAUCGGCGUCGuCGACGcaucuGUCa -3'
miRNA:   3'- -GGU---UGUGGCCGCGGCcGCUGCac---CAG- -5'
30187 3' -60 NC_006273.1 + 71539 0.66 0.880352
Target:  5'- gCCcuCGCCGGCggccgcuGCCGGCGACuUGcGa- -3'
miRNA:   3'- -GGuuGUGGCCG-------CGGCCGCUGcAC-Cag -5'
30187 3' -60 NC_006273.1 + 219306 0.66 0.880352
Target:  5'- -gAAUGCCGaGCGacaacacCUGGuCGACGUGGUUa -3'
miRNA:   3'- ggUUGUGGC-CGC-------GGCC-GCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 137697 0.66 0.880352
Target:  5'- aCCAACACCgacagguGGUGCUcaugaGGUGugGU-GUCg -3'
miRNA:   3'- -GGUUGUGG-------CCGCGG-----CCGCugCAcCAG- -5'
30187 3' -60 NC_006273.1 + 93205 0.66 0.880352
Target:  5'- uCCGAggggucgcugcCGCCGGUgaagagaGCgCGGCGuACGcUGGUCa -3'
miRNA:   3'- -GGUU-----------GUGGCCG-------CG-GCCGC-UGC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 129451 0.66 0.879027
Target:  5'- uCgAGCGCCGaccaguucuccaucGCGgCGGCGGCGUGa-- -3'
miRNA:   3'- -GgUUGUGGC--------------CGCgGCCGCUGCACcag -5'
30187 3' -60 NC_006273.1 + 210722 0.66 0.874327
Target:  5'- gCAGCGCgGGUGCCGGUuucgcugagcgaGAaccGGUCg -3'
miRNA:   3'- gGUUGUGgCCGCGGCCG------------CUgcaCCAG- -5'
30187 3' -60 NC_006273.1 + 198974 0.66 0.874327
Target:  5'- gCGACACgGGCaCCGuguacGCGGCGcUGGUg -3'
miRNA:   3'- gGUUGUGgCCGcGGC-----CGCUGC-ACCAg -5'
30187 3' -60 NC_006273.1 + 192682 0.66 0.874327
Target:  5'- gCCAACA-CGGCGCUGGUcaACGccGUCa -3'
miRNA:   3'- -GGUUGUgGCCGCGGCCGc-UGCacCAG- -5'
30187 3' -60 NC_006273.1 + 43985 0.66 0.874327
Target:  5'- cUCGACGaCGGCuaCGGCGACGaGG-Ca -3'
miRNA:   3'- -GGUUGUgGCCGcgGCCGCUGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 144799 0.66 0.874327
Target:  5'- gCAgucACAcCCGGUGCCGG--GCGUGGa- -3'
miRNA:   3'- gGU---UGU-GGCCGCGGCCgcUGCACCag -5'
30187 3' -60 NC_006273.1 + 211186 0.66 0.874327
Target:  5'- -aGACgGCCGGCG-CGGCGG-GUGGg- -3'
miRNA:   3'- ggUUG-UGGCCGCgGCCGCUgCACCag -5'
30187 3' -60 NC_006273.1 + 200688 0.66 0.874327
Target:  5'- aCCAACACCGGCuucaUGGCucCGaaGGUCc -3'
miRNA:   3'- -GGUUGUGGCCGcg--GCCGcuGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 119027 0.66 0.874327
Target:  5'- uCgGACAggggggUCGGCGUCGGUGugGaggagaGGUCa -3'
miRNA:   3'- -GgUUGU------GGCCGCGGCCGCugCa-----CCAG- -5'
30187 3' -60 NC_006273.1 + 41526 0.66 0.870224
Target:  5'- gCAGCGCCGGCGCCaGCaggaacguuaacuccGGCGccgaacGUCa -3'
miRNA:   3'- gGUUGUGGCCGCGGcCG---------------CUGCac----CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.