miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 34154 0.66 0.853152
Target:  5'- uUCAACGCCGcuucggcucGCGCCauaaacGUGGCGUGGa- -3'
miRNA:   3'- -GGUUGUGGC---------CGCGGc-----CGCUGCACCag -5'
30187 3' -60 NC_006273.1 + 99503 0.66 0.845737
Target:  5'- gCggUACCGGUGgUGGCGGCGgcGGc- -3'
miRNA:   3'- gGuuGUGGCCGCgGCCGCUGCa-CCag -5'
30187 3' -60 NC_006273.1 + 200688 0.66 0.874327
Target:  5'- aCCAACACCGGCuucaUGGCucCGaaGGUCc -3'
miRNA:   3'- -GGUUGUGGCCGcg--GCCGcuGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 61472 0.66 0.860393
Target:  5'- --cGCGCCGugaGCGCCuGGUgaucGGCGUGGUa -3'
miRNA:   3'- gguUGUGGC---CGCGG-CCG----CUGCACCAg -5'
30187 3' -60 NC_006273.1 + 119027 0.66 0.874327
Target:  5'- uCgGACAggggggUCGGCGUCGGUGugGaggagaGGUCa -3'
miRNA:   3'- -GgUUGU------GGCCGCGGCCGCugCa-----CCAG- -5'
30187 3' -60 NC_006273.1 + 119995 0.66 0.845737
Target:  5'- -gAGC-CUGGCGUCaGGCGuCGUGGg- -3'
miRNA:   3'- ggUUGuGGCCGCGG-CCGCuGCACCag -5'
30187 3' -60 NC_006273.1 + 115212 0.66 0.867452
Target:  5'- gCCGACG-CGaCGUCGGCGGCcguuGUGGUa -3'
miRNA:   3'- -GGUUGUgGCcGCGGCCGCUG----CACCAg -5'
30187 3' -60 NC_006273.1 + 144799 0.66 0.874327
Target:  5'- gCAgucACAcCCGGUGCCGG--GCGUGGa- -3'
miRNA:   3'- gGU---UGU-GGCCGCGGCCgcUGCACCag -5'
30187 3' -60 NC_006273.1 + 210722 0.66 0.874327
Target:  5'- gCAGCGCgGGUGCCGGUuucgcugagcgaGAaccGGUCg -3'
miRNA:   3'- gGUUGUGgCCGCGGCCG------------CUgcaCCAG- -5'
30187 3' -60 NC_006273.1 + 149734 0.66 0.866755
Target:  5'- uCCuGgGCCGGCuGCCGGCGcuguuacgggagcGCGUGagcguGUCc -3'
miRNA:   3'- -GGuUgUGGCCG-CGGCCGC-------------UGCAC-----CAG- -5'
30187 3' -60 NC_006273.1 + 105105 0.66 0.860393
Target:  5'- cUCGAgGCCGGCG-CGGCuGCGacGGUUg -3'
miRNA:   3'- -GGUUgUGGCCGCgGCCGcUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 21658 0.66 0.867452
Target:  5'- aCCGAgACCacGGCGCUGGUggccGACGUGc-- -3'
miRNA:   3'- -GGUUgUGG--CCGCGGCCG----CUGCACcag -5'
30187 3' -60 NC_006273.1 + 195906 0.66 0.850946
Target:  5'- gCgGGCACUGGUGCgagugcugcgccuaCGGCGACGccgGGcCa -3'
miRNA:   3'- -GgUUGUGGCCGCG--------------GCCGCUGCa--CCaG- -5'
30187 3' -60 NC_006273.1 + 132507 0.66 0.860393
Target:  5'- aCCGcCGCCGcccgaCGCCGaagaCGACGUGGUUu -3'
miRNA:   3'- -GGUuGUGGCc----GCGGCc---GCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 177695 0.66 0.881012
Target:  5'- gCCGACGCUGGCGCU-GCGGC-UGa-- -3'
miRNA:   3'- -GGUUGUGGCCGCGGcCGCUGcACcag -5'
30187 3' -60 NC_006273.1 + 120744 0.66 0.853152
Target:  5'- gCCAggAUGCCGGcCGCCagGGCGGCcaGGUg -3'
miRNA:   3'- -GGU--UGUGGCC-GCGG--CCGCUGcaCCAg -5'
30187 3' -60 NC_006273.1 + 95153 0.66 0.860393
Target:  5'- aCCGuCG-CGGCuuGCUGGCccugGGCGUGGUCc -3'
miRNA:   3'- -GGUuGUgGCCG--CGGCCG----CUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 61919 0.66 0.845737
Target:  5'- aCCAGCACgaCGGCGgCGGaGACGaGGa- -3'
miRNA:   3'- -GGUUGUG--GCCGCgGCCgCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 41526 0.66 0.870224
Target:  5'- gCAGCGCCGGCGCCaGCaggaacguuaacuccGGCGccgaacGUCa -3'
miRNA:   3'- gGUUGUGGCCGCGGcCG---------------CUGCac----CAG- -5'
30187 3' -60 NC_006273.1 + 166479 0.66 0.860393
Target:  5'- gUggUACCGGUGgUGGCGACGguaguguuuGUCg -3'
miRNA:   3'- gGuuGUGGCCGCgGCCGCUGCac-------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.