miRNA display CGI


Results 21 - 40 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 132507 0.66 0.860393
Target:  5'- aCCGcCGCCGcccgaCGCCGaagaCGACGUGGUUu -3'
miRNA:   3'- -GGUuGUGGCc----GCGGCc---GCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 149734 0.66 0.866755
Target:  5'- uCCuGgGCCGGCuGCCGGCGcuguuacgggagcGCGUGagcguGUCc -3'
miRNA:   3'- -GGuUgUGGCCG-CGGCCGC-------------UGCAC-----CAG- -5'
30187 3' -60 NC_006273.1 + 192682 0.66 0.874327
Target:  5'- gCCAACA-CGGCGCUGGUcaACGccGUCa -3'
miRNA:   3'- -GGUUGUgGCCGCGGCCGc-UGCacCAG- -5'
30187 3' -60 NC_006273.1 + 43985 0.66 0.874327
Target:  5'- cUCGACGaCGGCuaCGGCGACGaGG-Ca -3'
miRNA:   3'- -GGUUGUgGCCGcgGCCGCUGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 198974 0.66 0.874327
Target:  5'- gCGACACgGGCaCCGuguacGCGGCGcUGGUg -3'
miRNA:   3'- gGUUGUGgCCGcGGC-----CGCUGC-ACCAg -5'
30187 3' -60 NC_006273.1 + 188890 0.66 0.845737
Target:  5'- gUCAACAUCucgagcagcaGGCGCCGGUGcuCGUcuccaaacaGGUCa -3'
miRNA:   3'- -GGUUGUGG----------CCGCGGCCGCu-GCA---------CCAG- -5'
30187 3' -60 NC_006273.1 + 186592 0.66 0.845737
Target:  5'- cCCAGCACUGuCGCUGuGCaccgauGACGUGGa- -3'
miRNA:   3'- -GGUUGUGGCcGCGGC-CG------CUGCACCag -5'
30187 3' -60 NC_006273.1 + 137697 0.66 0.880352
Target:  5'- aCCAACACCgacagguGGUGCUcaugaGGUGugGU-GUCg -3'
miRNA:   3'- -GGUUGUGG-------CCGCGG-----CCGCugCAcCAG- -5'
30187 3' -60 NC_006273.1 + 129298 0.66 0.843479
Target:  5'- cCCAcCAuCUGGCucccggguaccgcgGCCGGCGugACGgUGGUCa -3'
miRNA:   3'- -GGUuGU-GGCCG--------------CGGCCGC--UGC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 165639 0.66 0.853152
Target:  5'- gCAGCA-CGGUGCC-GCGGCccGGUCu -3'
miRNA:   3'- gGUUGUgGCCGCGGcCGCUGcaCCAG- -5'
30187 3' -60 NC_006273.1 + 7601 0.66 0.881012
Target:  5'- aCAGCGCCaucuccuccuGGagGCCGGCGACGUu--- -3'
miRNA:   3'- gGUUGUGG----------CCg-CGGCCGCUGCAccag -5'
30187 3' -60 NC_006273.1 + 185401 0.66 0.881012
Target:  5'- uCCcuCGCCGuCG-CGGcCGACGUGGUg -3'
miRNA:   3'- -GGuuGUGGCcGCgGCC-GCUGCACCAg -5'
30187 3' -60 NC_006273.1 + 21658 0.66 0.867452
Target:  5'- aCCGAgACCacGGCGCUGGUggccGACGUGc-- -3'
miRNA:   3'- -GGUUgUGG--CCGCGGCCG----CUGCACcag -5'
30187 3' -60 NC_006273.1 + 61472 0.66 0.860393
Target:  5'- --cGCGCCGugaGCGCCuGGUgaucGGCGUGGUa -3'
miRNA:   3'- gguUGUGGC---CGCGG-CCG----CUGCACCAg -5'
30187 3' -60 NC_006273.1 + 99503 0.66 0.845737
Target:  5'- gCggUACCGGUGgUGGCGGCGgcGGc- -3'
miRNA:   3'- gGuuGUGGCCGCgGCCGCUGCa-CCag -5'
30187 3' -60 NC_006273.1 + 13567 0.66 0.853152
Target:  5'- gCAACGCCGGgugcucaccCGCCGGgCGGCccgGGcCg -3'
miRNA:   3'- gGUUGUGGCC---------GCGGCC-GCUGca-CCaG- -5'
30187 3' -60 NC_006273.1 + 171161 0.66 0.845737
Target:  5'- gCCAGguCAUCGGCGCuagCGcGCGAUGUcGGUg -3'
miRNA:   3'- -GGUU--GUGGCCGCG---GC-CGCUGCA-CCAg -5'
30187 3' -60 NC_006273.1 + 177695 0.66 0.881012
Target:  5'- gCCGACGCUGGCGCU-GCGGC-UGa-- -3'
miRNA:   3'- -GGUUGUGGCCGCGGcCGCUGcACcag -5'
30187 3' -60 NC_006273.1 + 61919 0.66 0.845737
Target:  5'- aCCAGCACgaCGGCGgCGGaGACGaGGa- -3'
miRNA:   3'- -GGUUGUG--GCCGCgGCCgCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 119995 0.66 0.845737
Target:  5'- -gAGC-CUGGCGUCaGGCGuCGUGGg- -3'
miRNA:   3'- ggUUGuGGCCGCGG-CCGCuGCACCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.