miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 185058 1.11 0.001845
Target:  5'- aCCAACACCGGCGCCGGCGACGUGGUCu -3'
miRNA:   3'- -GGUUGUGGCCGCGGCCGCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 148777 0.82 0.153219
Target:  5'- aCCGAgGCCGGCGgCGGCGcCGUGcGUCu -3'
miRNA:   3'- -GGUUgUGGCCGCgGCCGCuGCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 50328 0.8 0.212889
Target:  5'- aCCAcguCGCCGGCGCCGGUGu--UGGUCg -3'
miRNA:   3'- -GGUu--GUGGCCGCGGCCGCugcACCAG- -5'
30187 3' -60 NC_006273.1 + 134935 0.79 0.217839
Target:  5'- gCCGACACCGGCGCCGcGUGACGc---- -3'
miRNA:   3'- -GGUUGUGGCCGCGGC-CGCUGCaccag -5'
30187 3' -60 NC_006273.1 + 100460 0.79 0.233283
Target:  5'- gCGGCGCCGGUGUCGGCGGauUGGUUc -3'
miRNA:   3'- gGUUGUGGCCGCGGCCGCUgcACCAG- -5'
30187 3' -60 NC_006273.1 + 129385 0.79 0.238632
Target:  5'- uCCu-CGCCGGCGCUGGUcuuGACGUGcGUCa -3'
miRNA:   3'- -GGuuGUGGCCGCGGCCG---CUGCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 30684 0.78 0.272903
Target:  5'- gCCGGC-CgCGGUGCCGGCGGCuaugauccuGUGGUCc -3'
miRNA:   3'- -GGUUGuG-GCCGCGGCCGCUG---------CACCAG- -5'
30187 3' -60 NC_006273.1 + 30759 0.77 0.278985
Target:  5'- cCCGAgAaCGGCGCCGGCGGCgGUGG-Cg -3'
miRNA:   3'- -GGUUgUgGCCGCGGCCGCUG-CACCaG- -5'
30187 3' -60 NC_006273.1 + 1596 0.77 0.29147
Target:  5'- uUCGGCA-CGGCGCgGGCGAgGUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGgCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 196489 0.77 0.29147
Target:  5'- uUCGGCA-CGGCGCgGGCGAgGUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGgCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 8 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 234839 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 194901 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 73762 0.76 0.345759
Target:  5'- cCCGGCAgCGGCGCCGccaGCGGCGaccaUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGGC---CGCUGC----ACCAg -5'
30187 3' -60 NC_006273.1 + 25495 0.76 0.353034
Target:  5'- gCCuucuGCuACgCGGCGCCcGCGACGUGGUUu -3'
miRNA:   3'- -GGu---UG-UG-GCCGCGGcCGCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 67473 0.75 0.383204
Target:  5'- cCCAACccguccccccGCUGaGCGuuGGCGGCGaUGGUCa -3'
miRNA:   3'- -GGUUG----------UGGC-CGCggCCGCUGC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 113497 0.75 0.391009
Target:  5'- uCgGAUGCCGuaGCCGGCGGCG-GGUUg -3'
miRNA:   3'- -GgUUGUGGCcgCGGCCGCUGCaCCAG- -5'
30187 3' -60 NC_006273.1 + 197081 0.75 0.398917
Target:  5'- gCAGCGgCGGCGCCgacGGUGAUGgugGGUCc -3'
miRNA:   3'- gGUUGUgGCCGCGG---CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 2188 0.75 0.398917
Target:  5'- gCAGCGgCGGCGCCgacGGUGAUGgugGGUCc -3'
miRNA:   3'- gGUUGUgGCCGCGG---CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 971 0.75 0.406928
Target:  5'- -gGGCGCCGGCGCCGGUaACG-GGa- -3'
miRNA:   3'- ggUUGUGGCCGCGGCCGcUGCaCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.