miRNA display CGI


Results 21 - 40 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 185297 0.74 0.415038
Target:  5'- -aAACGUCGG-GCCGGCGugGUGGUg -3'
miRNA:   3'- ggUUGUGGCCgCGGCCGCugCACCAg -5'
30187 3' -60 NC_006273.1 + 184644 0.74 0.415038
Target:  5'- -aGACGCCagGGCGUCGGCGACcagaucUGGUCu -3'
miRNA:   3'- ggUUGUGG--CCGCGGCCGCUGc-----ACCAG- -5'
30187 3' -60 NC_006273.1 + 120941 0.74 0.423247
Target:  5'- gCCAugGCGCCGcCGCCGGUGACGcGGg- -3'
miRNA:   3'- -GGU--UGUGGCcGCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 116767 0.74 0.439107
Target:  5'- gCCGGCcucucgcucuccaGCCGGCGCUGcGaCGACGUGGa- -3'
miRNA:   3'- -GGUUG-------------UGGCCGCGGC-C-GCUGCACCag -5'
30187 3' -60 NC_006273.1 + 87966 0.74 0.439951
Target:  5'- cCCGACGCCGGaCGCCGcGCcGACGccacUGGg- -3'
miRNA:   3'- -GGUUGUGGCC-GCGGC-CG-CUGC----ACCag -5'
30187 3' -60 NC_006273.1 + 20364 0.74 0.457025
Target:  5'- cCCAACACCGGCGgaccgcgacCCGGCGguGCG-GGa- -3'
miRNA:   3'- -GGUUGUGGCCGC---------GGCCGC--UGCaCCag -5'
30187 3' -60 NC_006273.1 + 140766 0.73 0.465695
Target:  5'- gUCAGCagGCCGGgucgaugaCGCCGGCGACGaGGUg -3'
miRNA:   3'- -GGUUG--UGGCC--------GCGGCCGCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 155438 0.73 0.474449
Target:  5'- aCCGcCGCCGuGC-CCGGCGACGcgGGUUc -3'
miRNA:   3'- -GGUuGUGGC-CGcGGCCGCUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 189316 0.73 0.483284
Target:  5'- gCGGCACCugcGGCGUCGGCGG-GUGGg- -3'
miRNA:   3'- gGUUGUGG---CCGCGGCCGCUgCACCag -5'
30187 3' -60 NC_006273.1 + 177521 0.73 0.483284
Target:  5'- gCCAGCgaACCGGCGgCGuuGaACGUGGUCc -3'
miRNA:   3'- -GGUUG--UGGCCGCgGCcgC-UGCACCAG- -5'
30187 3' -60 NC_006273.1 + 188048 0.73 0.510248
Target:  5'- gCgAugACa-GCGCCGGCGGCGcgGGUCu -3'
miRNA:   3'- -GgUugUGgcCGCGGCCGCUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 214928 0.72 0.528567
Target:  5'- gCgAGCGagUGGgGCaCGGUGACGUGGUCa -3'
miRNA:   3'- -GgUUGUg-GCCgCG-GCCGCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 149444 0.72 0.532261
Target:  5'- gCAACGgCGGCGCCGGUgguaguccgcuccacGGgGUGGUg -3'
miRNA:   3'- gGUUGUgGCCGCGGCCG---------------CUgCACCAg -5'
30187 3' -60 NC_006273.1 + 116409 0.72 0.537819
Target:  5'- -aGGCugUGGCGCCGGUcuACGUGGg- -3'
miRNA:   3'- ggUUGugGCCGCGGCCGc-UGCACCag -5'
30187 3' -60 NC_006273.1 + 201449 0.72 0.537819
Target:  5'- uCCGcCACCucacaGCCGGCGACGUGGcCc -3'
miRNA:   3'- -GGUuGUGGccg--CGGCCGCUGCACCaG- -5'
30187 3' -60 NC_006273.1 + 140674 0.72 0.537819
Target:  5'- gCCAACGCCgcaGGCGacgaCGGCGG-GUGGUg -3'
miRNA:   3'- -GGUUGUGG---CCGCg---GCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 144402 0.72 0.547125
Target:  5'- gUCAGCGgcugucugcCCGGCGCCgcGGCGGCGgacGGUUc -3'
miRNA:   3'- -GGUUGU---------GGCCGCGG--CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 146364 0.72 0.547125
Target:  5'- uCCAAguCUGGUGCgGGUGGCGgcggGGUUa -3'
miRNA:   3'- -GGUUguGGCCGCGgCCGCUGCa---CCAG- -5'
30187 3' -60 NC_006273.1 + 166944 0.72 0.547125
Target:  5'- aUCAGCGCCuuGGCGUCGG-GG-GUGGUCa -3'
miRNA:   3'- -GGUUGUGG--CCGCGGCCgCUgCACCAG- -5'
30187 3' -60 NC_006273.1 + 147535 0.72 0.565884
Target:  5'- -gAACGCCGGCgaagacgagGCUGGCGGCGUcGG-Cg -3'
miRNA:   3'- ggUUGUGGCCG---------CGGCCGCUGCA-CCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.