miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 164271 0.72 0.565884
Target:  5'- gCGAaACUGGUGCUGGCGGCGccgGGUg -3'
miRNA:   3'- gGUUgUGGCCGCGGCCGCUGCa--CCAg -5'
30187 3' -60 NC_006273.1 + 97352 0.72 0.568713
Target:  5'- gCAGCaACCaGGCGCCGGCGccgccuaGCGUcacugccuucugacaGGUCa -3'
miRNA:   3'- gGUUG-UGG-CCGCGGCCGC-------UGCA---------------CCAG- -5'
30187 3' -60 NC_006273.1 + 160891 0.71 0.575327
Target:  5'- gCCGGCGCCGGguaaauaaauCGgCGGUGGCGUcGGUg -3'
miRNA:   3'- -GGUUGUGGCC----------GCgGCCGCUGCA-CCAg -5'
30187 3' -60 NC_006273.1 + 208927 0.71 0.579115
Target:  5'- aCCAACACCGGUGUgcagcuaagcaauagCGGCGAgGgaucGUCg -3'
miRNA:   3'- -GGUUGUGGCCGCG---------------GCCGCUgCac--CAG- -5'
30187 3' -60 NC_006273.1 + 120591 0.71 0.584806
Target:  5'- ----uGCCGGUGgCGGCGACGUuugGGUUg -3'
miRNA:   3'- gguugUGGCCGCgGCCGCUGCA---CCAG- -5'
30187 3' -60 NC_006273.1 + 126856 0.71 0.593362
Target:  5'- gCAGCAgCGGCGUaugugcgucggUGGCGACGUccuccaccagcucGGUCa -3'
miRNA:   3'- gGUUGUgGCCGCG-----------GCCGCUGCA-------------CCAG- -5'
30187 3' -60 NC_006273.1 + 101748 0.71 0.594314
Target:  5'- -aGACGgCGGuCGCCGGCGGCaUGGg- -3'
miRNA:   3'- ggUUGUgGCC-GCGGCCGCUGcACCag -5'
30187 3' -60 NC_006273.1 + 1966 0.71 0.594314
Target:  5'- --cGCGgCGGgGCCGGCGACG-GGg- -3'
miRNA:   3'- gguUGUgGCCgCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 196858 0.71 0.594314
Target:  5'- --cGCGgCGGgGCCGGCGACG-GGg- -3'
miRNA:   3'- gguUGUgGCCgCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 128572 0.71 0.600985
Target:  5'- -gGugGCCGGCGCCgagaccguuucuuuGGUGAUGUGGc- -3'
miRNA:   3'- ggUugUGGCCGCGG--------------CCGCUGCACCag -5'
30187 3' -60 NC_006273.1 + 93509 0.71 0.603847
Target:  5'- -uGACGCCGcCGCCGGCcuCGUcGGUCa -3'
miRNA:   3'- ggUUGUGGCcGCGGCCGcuGCA-CCAG- -5'
30187 3' -60 NC_006273.1 + 167326 0.71 0.613397
Target:  5'- gCGGCAgCGGCGgccaCGGCGGCGcUGGcCg -3'
miRNA:   3'- gGUUGUgGCCGCg---GCCGCUGC-ACCaG- -5'
30187 3' -60 NC_006273.1 + 3634 0.71 0.613397
Target:  5'- uCCucGC-CCGGCGCCGGCaugccGAgGUGGg- -3'
miRNA:   3'- -GGu-UGuGGCCGCGGCCG-----CUgCACCag -5'
30187 3' -60 NC_006273.1 + 163653 0.71 0.613397
Target:  5'- gCCAcCACCacCGCCgGGCGACGUcggGGUCg -3'
miRNA:   3'- -GGUuGUGGccGCGG-CCGCUGCA---CCAG- -5'
30187 3' -60 NC_006273.1 + 183934 0.71 0.613397
Target:  5'- aCAcgGCCGGgGagGGCGACGUGGUa -3'
miRNA:   3'- gGUugUGGCCgCggCCGCUGCACCAg -5'
30187 3' -60 NC_006273.1 + 71878 0.71 0.617221
Target:  5'- uUCGACugCGGCGgcaacgggcgcgacaCCGGCGACGgaaccugagGGUa -3'
miRNA:   3'- -GGUUGugGCCGC---------------GGCCGCUGCa--------CCAg -5'
30187 3' -60 NC_006273.1 + 51615 0.7 0.63253
Target:  5'- uCCGACACgGGCGacggcaggcUCGGCGGCGcGGa- -3'
miRNA:   3'- -GGUUGUGgCCGC---------GGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 138027 0.7 0.63253
Target:  5'- -uGACGCuaggCGGCGCCGGCG-CcUGGUUg -3'
miRNA:   3'- ggUUGUG----GCCGCGGCCGCuGcACCAG- -5'
30187 3' -60 NC_006273.1 + 149979 0.7 0.642099
Target:  5'- gCCGAUAUCGGCuaCGGCGucuAUGUGGa- -3'
miRNA:   3'- -GGUUGUGGCCGcgGCCGC---UGCACCag -5'
30187 3' -60 NC_006273.1 + 179768 0.7 0.642099
Target:  5'- uUCGAgACCGGC---GGCGACGUGgGUCg -3'
miRNA:   3'- -GGUUgUGGCCGcggCCGCUGCAC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.