miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 21658 0.66 0.867452
Target:  5'- aCCGAgACCacGGCGCUGGUggccGACGUGc-- -3'
miRNA:   3'- -GGUUgUGG--CCGCGGCCG----CUGCACcag -5'
30187 3' -60 NC_006273.1 + 115212 0.66 0.867452
Target:  5'- gCCGACG-CGaCGUCGGCGGCcguuGUGGUa -3'
miRNA:   3'- -GGUUGUgGCcGCGGCCGCUG----CACCAg -5'
30187 3' -60 NC_006273.1 + 139855 0.66 0.867452
Target:  5'- --cACGCCGG-GUgGGaCGGuCGUGGUCu -3'
miRNA:   3'- gguUGUGGCCgCGgCC-GCU-GCACCAG- -5'
30187 3' -60 NC_006273.1 + 149734 0.66 0.866755
Target:  5'- uCCuGgGCCGGCuGCCGGCGcuguuacgggagcGCGUGagcguGUCc -3'
miRNA:   3'- -GGuUgUGGCCG-CGGCCGC-------------UGCAC-----CAG- -5'
30187 3' -60 NC_006273.1 + 132507 0.66 0.860393
Target:  5'- aCCGcCGCCGcccgaCGCCGaagaCGACGUGGUUu -3'
miRNA:   3'- -GGUuGUGGCc----GCGGCc---GCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 105105 0.66 0.860393
Target:  5'- cUCGAgGCCGGCG-CGGCuGCGacGGUUg -3'
miRNA:   3'- -GGUUgUGGCCGCgGCCGcUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 145613 0.66 0.860393
Target:  5'- gCGACGgucUgGGCGgCGGuCGugGUGGUg -3'
miRNA:   3'- gGUUGU---GgCCGCgGCC-GCugCACCAg -5'
30187 3' -60 NC_006273.1 + 61472 0.66 0.860393
Target:  5'- --cGCGCCGugaGCGCCuGGUgaucGGCGUGGUa -3'
miRNA:   3'- gguUGUGGC---CGCGG-CCG----CUGCACCAg -5'
30187 3' -60 NC_006273.1 + 95153 0.66 0.860393
Target:  5'- aCCGuCG-CGGCuuGCUGGCccugGGCGUGGUCc -3'
miRNA:   3'- -GGUuGUgGCCG--CGGCCG----CUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 166479 0.66 0.860393
Target:  5'- gUggUACCGGUGgUGGCGACGguaguguuuGUCg -3'
miRNA:   3'- gGuuGUGGCCGCgGCCGCUGCac-------CAG- -5'
30187 3' -60 NC_006273.1 + 71504 0.66 0.857518
Target:  5'- gCCAGCACCGG-GUgGGUGGCcucugagaucucGGUCg -3'
miRNA:   3'- -GGUUGUGGCCgCGgCCGCUGca----------CCAG- -5'
30187 3' -60 NC_006273.1 + 186323 0.66 0.853152
Target:  5'- uUCAGCgGCCGGCGUgaGGCcauCGUGcGUCu -3'
miRNA:   3'- -GGUUG-UGGCCGCGg-CCGcu-GCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 13567 0.66 0.853152
Target:  5'- gCAACGCCGGgugcucaccCGCCGGgCGGCccgGGcCg -3'
miRNA:   3'- gGUUGUGGCC---------GCGGCC-GCUGca-CCaG- -5'
30187 3' -60 NC_006273.1 + 34154 0.66 0.853152
Target:  5'- uUCAACGCCGcuucggcucGCGCCauaaacGUGGCGUGGa- -3'
miRNA:   3'- -GGUUGUGGC---------CGCGGc-----CGCUGCACCag -5'
30187 3' -60 NC_006273.1 + 165639 0.66 0.853152
Target:  5'- gCAGCA-CGGUGCC-GCGGCccGGUCu -3'
miRNA:   3'- gGUUGUgGCCGCGGcCGCUGcaCCAG- -5'
30187 3' -60 NC_006273.1 + 120744 0.66 0.853152
Target:  5'- gCCAggAUGCCGGcCGCCagGGCGGCcaGGUg -3'
miRNA:   3'- -GGU--UGUGGCC-GCGG--CCGCUGcaCCAg -5'
30187 3' -60 NC_006273.1 + 1013 0.66 0.850946
Target:  5'- gCgGGCACUGGUGCgagugcugcgccuaCGGCGACGccgGGcCa -3'
miRNA:   3'- -GgUUGUGGCCGCG--------------GCCGCUGCa--CCaG- -5'
30187 3' -60 NC_006273.1 + 195906 0.66 0.850946
Target:  5'- gCgGGCACUGGUGCgagugcugcgccuaCGGCGACGccgGGcCa -3'
miRNA:   3'- -GgUUGUGGCCGCG--------------GCCGCUGCa--CCaG- -5'
30187 3' -60 NC_006273.1 + 188890 0.66 0.845737
Target:  5'- gUCAACAUCucgagcagcaGGCGCCGGUGcuCGUcuccaaacaGGUCa -3'
miRNA:   3'- -GGUUGUGG----------CCGCGGCCGCu-GCA---------CCAG- -5'
30187 3' -60 NC_006273.1 + 186592 0.66 0.845737
Target:  5'- cCCAGCACUGuCGCUGuGCaccgauGACGUGGa- -3'
miRNA:   3'- -GGUUGUGGCcGCGGC-CG------CUGCACCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.