miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 188890 0.66 0.845737
Target:  5'- gUCAACAUCucgagcagcaGGCGCCGGUGcuCGUcuccaaacaGGUCa -3'
miRNA:   3'- -GGUUGUGG----------CCGCGGCCGCu-GCA---------CCAG- -5'
30187 3' -60 NC_006273.1 + 186592 0.66 0.845737
Target:  5'- cCCAGCACUGuCGCUGuGCaccgauGACGUGGa- -3'
miRNA:   3'- -GGUUGUGGCcGCGGC-CG------CUGCACCag -5'
30187 3' -60 NC_006273.1 + 99503 0.66 0.845737
Target:  5'- gCggUACCGGUGgUGGCGGCGgcGGc- -3'
miRNA:   3'- gGuuGUGGCCGCgGCCGCUGCa-CCag -5'
30187 3' -60 NC_006273.1 + 61919 0.66 0.845737
Target:  5'- aCCAGCACgaCGGCGgCGGaGACGaGGa- -3'
miRNA:   3'- -GGUUGUG--GCCGCgGCCgCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 129298 0.66 0.843479
Target:  5'- cCCAcCAuCUGGCucccggguaccgcgGCCGGCGugACGgUGGUCa -3'
miRNA:   3'- -GGUuGU-GGCCG--------------CGGCCGC--UGC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 190658 0.67 0.841207
Target:  5'- uCCAGCucgGCCGGCGguucggcguccuccaCCaGCGGCGUcGUCu -3'
miRNA:   3'- -GGUUG---UGGCCGC---------------GGcCGCUGCAcCAG- -5'
30187 3' -60 NC_006273.1 + 72456 0.67 0.838153
Target:  5'- gUAACGCaccguCGGUGCCGGCGGCcacGUCc -3'
miRNA:   3'- gGUUGUG-----GCCGCGGCCGCUGcacCAG- -5'
30187 3' -60 NC_006273.1 + 231752 0.67 0.838153
Target:  5'- cUCGGCauGCCGGCGCCGGgCGAgGaauUGcUCa -3'
miRNA:   3'- -GGUUG--UGGCCGCGGCC-GCUgC---ACcAG- -5'
30187 3' -60 NC_006273.1 + 200896 0.67 0.838153
Target:  5'- cUCAACGCCGGCGCUuuccgccgucuGGUGcACGaGG-Cg -3'
miRNA:   3'- -GGUUGUGGCCGCGG-----------CCGC-UGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 71731 0.67 0.838153
Target:  5'- cCCGACGuCC-GC-CCGGCgGugGUGGUg -3'
miRNA:   3'- -GGUUGU-GGcCGcGGCCG-CugCACCAg -5'
30187 3' -60 NC_006273.1 + 58923 0.67 0.838153
Target:  5'- uCCAcagGCugCGGUGuCCGGaCGGCGaaGUCu -3'
miRNA:   3'- -GGU---UGugGCCGC-GGCC-GCUGCacCAG- -5'
30187 3' -60 NC_006273.1 + 90353 0.67 0.838153
Target:  5'- gCCGuacCGCCGGCGCUGGgaugccgcgcCGACGacUGGa- -3'
miRNA:   3'- -GGUu--GUGGCCGCGGCC----------GCUGC--ACCag -5'
30187 3' -60 NC_006273.1 + 122825 0.67 0.838153
Target:  5'- -aAGCACCGGCgGCCGcugacGCGGCGaccGcGUCa -3'
miRNA:   3'- ggUUGUGGCCG-CGGC-----CGCUGCa--C-CAG- -5'
30187 3' -60 NC_006273.1 + 187534 0.67 0.837385
Target:  5'- uCCGACucccgccguaCGGCGCCGaggcccaGCGACGacaGGUCc -3'
miRNA:   3'- -GGUUGug--------GCCGCGGC-------CGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 185877 0.67 0.833523
Target:  5'- aCGACuACUGGaaCGCCguuaugcucuaccgcGGCGACGUGGa- -3'
miRNA:   3'- gGUUG-UGGCC--GCGG---------------CCGCUGCACCag -5'
30187 3' -60 NC_006273.1 + 68784 0.67 0.830405
Target:  5'- gCGGCGgCGGCGauGGCGGgGcUGGUUg -3'
miRNA:   3'- gGUUGUgGCCGCggCCGCUgC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 205980 0.67 0.830405
Target:  5'- gCCuAUACCGGgGCCGucuacgccuGCGACGUGcG-Cg -3'
miRNA:   3'- -GGuUGUGGCCgCGGC---------CGCUGCAC-CaG- -5'
30187 3' -60 NC_006273.1 + 144100 0.67 0.830405
Target:  5'- gCGugGCC-GCGCUGGCucgcGACGagGGUCu -3'
miRNA:   3'- gGUugUGGcCGCGGCCG----CUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 88588 0.67 0.830405
Target:  5'- gCGGcCAUgGGCGCCGGC-ACGccugcGGUCu -3'
miRNA:   3'- gGUU-GUGgCCGCGGCCGcUGCa----CCAG- -5'
30187 3' -60 NC_006273.1 + 227041 0.67 0.830405
Target:  5'- gCCAGCcaccaACCGGCgGCaCGGCGGCucuUGGa- -3'
miRNA:   3'- -GGUUG-----UGGCCG-CG-GCCGCUGc--ACCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.