miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 8 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 830 0.67 0.814441
Target:  5'- ----gACCaGCGCCGGgGACGgGGUg -3'
miRNA:   3'- gguugUGGcCGCGGCCgCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 971 0.75 0.406928
Target:  5'- -gGGCGCCGGCGCCGGUaACG-GGa- -3'
miRNA:   3'- ggUUGUGGCCGCGGCCGcUGCaCCag -5'
30187 3' -60 NC_006273.1 + 1013 0.66 0.850946
Target:  5'- gCgGGCACUGGUGCgagugcugcgccuaCGGCGACGccgGGcCa -3'
miRNA:   3'- -GgUUGUGGCCGCG--------------GCCGCUGCa--CCaG- -5'
30187 3' -60 NC_006273.1 + 1596 0.77 0.29147
Target:  5'- uUCGGCA-CGGCGCgGGCGAgGUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGgCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 1738 0.67 0.830405
Target:  5'- gCuGCGCCGGCgguggGCCGGCacGACgGUGG-Ca -3'
miRNA:   3'- gGuUGUGGCCG-----CGGCCG--CUG-CACCaG- -5'
30187 3' -60 NC_006273.1 + 1966 0.71 0.594314
Target:  5'- --cGCGgCGGgGCCGGCGACG-GGg- -3'
miRNA:   3'- gguUGUgGCCgCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 2188 0.75 0.398917
Target:  5'- gCAGCGgCGGCGCCgacGGUGAUGgugGGUCc -3'
miRNA:   3'- gGUUGUgGCCGCGG---CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 2205 0.68 0.780833
Target:  5'- aCCcGCACaUGGCGCUGGgcaCGACGcGGUg -3'
miRNA:   3'- -GGuUGUG-GCCGCGGCC---GCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 2217 0.67 0.797899
Target:  5'- nCCGACGgcgaUGGCGgguCCGGCGGCGUcGGg- -3'
miRNA:   3'- -GGUUGUg---GCCGC---GGCCGCUGCA-CCag -5'
30187 3' -60 NC_006273.1 + 2382 0.68 0.780833
Target:  5'- --cGCGCUGGCGCUGG-GGCGcGaGUCg -3'
miRNA:   3'- gguUGUGGCCGCGGCCgCUGCaC-CAG- -5'
30187 3' -60 NC_006273.1 + 3634 0.71 0.613397
Target:  5'- uCCucGC-CCGGCGCCGGCaugccGAgGUGGg- -3'
miRNA:   3'- -GGu-UGuGGCCGCGGCCG-----CUgCACCag -5'
30187 3' -60 NC_006273.1 + 7601 0.66 0.881012
Target:  5'- aCAGCGCCaucuccuccuGGagGCCGGCGACGUu--- -3'
miRNA:   3'- gGUUGUGG----------CCg-CGGCCGCUGCAccag -5'
30187 3' -60 NC_006273.1 + 7685 0.69 0.736258
Target:  5'- gCCGAUgguAUgGGCGgCGGCGGCaGUGGcCg -3'
miRNA:   3'- -GGUUG---UGgCCGCgGCCGCUG-CACCaG- -5'
30187 3' -60 NC_006273.1 + 13567 0.66 0.853152
Target:  5'- gCAACGCCGGgugcucaccCGCCGGgCGGCccgGGcCg -3'
miRNA:   3'- gGUUGUGGCC---------GCGGCC-GCUGca-CCaG- -5'
30187 3' -60 NC_006273.1 + 20364 0.74 0.457025
Target:  5'- cCCAACACCGGCGgaccgcgacCCGGCGguGCG-GGa- -3'
miRNA:   3'- -GGUUGUGGCCGC---------GGCCGC--UGCaCCag -5'
30187 3' -60 NC_006273.1 + 21536 0.67 0.806239
Target:  5'- gCgGGCGCUGGCGUuucgaggaCGGCGGCGcGG-Cg -3'
miRNA:   3'- -GgUUGUGGCCGCG--------GCCGCUGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 21658 0.66 0.867452
Target:  5'- aCCGAgACCacGGCGCUGGUggccGACGUGc-- -3'
miRNA:   3'- -GGUUgUGG--CCGCGGCCG----CUGCACcag -5'
30187 3' -60 NC_006273.1 + 22247 0.68 0.77562
Target:  5'- -gAugACgGGCGCCGGCGAgcgacgcggcuccgcCGUcGGUg -3'
miRNA:   3'- ggUugUGgCCGCGGCCGCU---------------GCA-CCAg -5'
30187 3' -60 NC_006273.1 + 25495 0.76 0.353034
Target:  5'- gCCuucuGCuACgCGGCGCCcGCGACGUGGUUu -3'
miRNA:   3'- -GGu---UG-UG-GCCGCGGcCGCUGCACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.