miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 30604 0.7 0.680238
Target:  5'- gCGGCACCGGCGCCGccaagaaaccgaGCGAaaagaaacgauCGUcGUCg -3'
miRNA:   3'- gGUUGUGGCCGCGGC------------CGCU-----------GCAcCAG- -5'
30187 3' -60 NC_006273.1 + 30684 0.78 0.272903
Target:  5'- gCCGGC-CgCGGUGCCGGCGGCuaugauccuGUGGUCc -3'
miRNA:   3'- -GGUUGuG-GCCGCGGCCGCUG---------CACCAG- -5'
30187 3' -60 NC_006273.1 + 30759 0.77 0.278985
Target:  5'- cCCGAgAaCGGCGCCGGCGGCgGUGG-Cg -3'
miRNA:   3'- -GGUUgUgGCCGCGGCCGCUG-CACCaG- -5'
30187 3' -60 NC_006273.1 + 34154 0.66 0.853152
Target:  5'- uUCAACGCCGcuucggcucGCGCCauaaacGUGGCGUGGa- -3'
miRNA:   3'- -GGUUGUGGC---------CGCGGc-----CGCUGCACCag -5'
30187 3' -60 NC_006273.1 + 35373 0.68 0.772121
Target:  5'- uCUGAUACCgGGCGCCGG-GACucUGGUg -3'
miRNA:   3'- -GGUUGUGG-CCGCGGCCgCUGc-ACCAg -5'
30187 3' -60 NC_006273.1 + 36633 0.67 0.828049
Target:  5'- uCCAGCcuucccaugcgggaACUGGC-CUGGCGGCG-GGUa -3'
miRNA:   3'- -GGUUG--------------UGGCCGcGGCCGCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 37134 0.67 0.806239
Target:  5'- gCC-GCGgaGGUGCUGGCGGcCGUGGcCu -3'
miRNA:   3'- -GGuUGUggCCGCGGCCGCU-GCACCaG- -5'
30187 3' -60 NC_006273.1 + 38256 0.68 0.780833
Target:  5'- aCCGGCAacgaCGGCGgUGGCGGCGaccagauuaUGGg- -3'
miRNA:   3'- -GGUUGUg---GCCGCgGCCGCUGC---------ACCag -5'
30187 3' -60 NC_006273.1 + 40768 0.67 0.814441
Target:  5'- ----gACCaGCGCCGGgGACGgGGUg -3'
miRNA:   3'- gguugUGGcCGCGGCCgCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 40965 0.7 0.670737
Target:  5'- cCCAGCACCGGUuuCUGGCu-CGUGGa- -3'
miRNA:   3'- -GGUUGUGGCCGc-GGCCGcuGCACCag -5'
30187 3' -60 NC_006273.1 + 41526 0.66 0.870224
Target:  5'- gCAGCGCCGGCGCCaGCaggaacguuaacuccGGCGccgaacGUCa -3'
miRNA:   3'- gGUUGUGGCCGCGGcCG---------------CUGCac----CAG- -5'
30187 3' -60 NC_006273.1 + 43808 0.7 0.680238
Target:  5'- uUAACACCGGCGUuuuCGG-GACGgucGGUUa -3'
miRNA:   3'- gGUUGUGGCCGCG---GCCgCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 43985 0.66 0.874327
Target:  5'- cUCGACGaCGGCuaCGGCGACGaGG-Ca -3'
miRNA:   3'- -GGUUGUgGCCGcgGCCGCUGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 44111 0.68 0.770366
Target:  5'- gCUGACGCUaguguggGGCGCCGcGCccguuaucaugauGACGUGGUUu -3'
miRNA:   3'- -GGUUGUGG-------CCGCGGC-CG-------------CUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 44794 0.69 0.708503
Target:  5'- gCGGCcgAUgGGCGCCGGCGgACGUGa-- -3'
miRNA:   3'- gGUUG--UGgCCGCGGCCGC-UGCACcag -5'
30187 3' -60 NC_006273.1 + 44832 0.68 0.788574
Target:  5'- cCCGACugCGGaCGCCGaCGgccaaucGCGUGG-Cg -3'
miRNA:   3'- -GGUUGugGCC-GCGGCcGC-------UGCACCaG- -5'
30187 3' -60 NC_006273.1 + 50328 0.8 0.212889
Target:  5'- aCCAcguCGCCGGCGCCGGUGu--UGGUCg -3'
miRNA:   3'- -GGUu--GUGGCCGCGGCCGCugcACCAG- -5'
30187 3' -60 NC_006273.1 + 51615 0.7 0.63253
Target:  5'- uCCGACACgGGCGacggcaggcUCGGCGGCGcGGa- -3'
miRNA:   3'- -GGUUGUGgCCGC---------GGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 57700 0.68 0.763301
Target:  5'- gCAGCGCCaGCGUCGGCGGCu----- -3'
miRNA:   3'- gGUUGUGGcCGCGGCCGCUGcaccag -5'
30187 3' -60 NC_006273.1 + 58923 0.67 0.838153
Target:  5'- uCCAcagGCugCGGUGuCCGGaCGGCGaaGUCu -3'
miRNA:   3'- -GGU---UGugGCCGC-GGCC-GCUGCacCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.