miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 234839 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 234420 0.67 0.806239
Target:  5'- cCCGuUACCGGCGCCGGCGcCc----- -3'
miRNA:   3'- -GGUuGUGGCCGCGGCCGCuGcaccag -5'
30187 3' -60 NC_006273.1 + 231752 0.67 0.838153
Target:  5'- cUCGGCauGCCGGCGCCGGgCGAgGaauUGcUCa -3'
miRNA:   3'- -GGUUG--UGGCCGCGGCC-GCUgC---ACcAG- -5'
30187 3' -60 NC_006273.1 + 231178 0.68 0.789428
Target:  5'- uCCgAGCugCGGUaugggucaCGGCGGCGUGcGUCu -3'
miRNA:   3'- -GG-UUGugGCCGcg------GCCGCUGCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 227041 0.67 0.830405
Target:  5'- gCCAGCcaccaACCGGCgGCaCGGCGGCucuUGGa- -3'
miRNA:   3'- -GGUUG-----UGGCCG-CG-GCCGCUGc--ACCag -5'
30187 3' -60 NC_006273.1 + 219306 0.66 0.880352
Target:  5'- -gAAUGCCGaGCGacaacacCUGGuCGACGUGGUUa -3'
miRNA:   3'- ggUUGUGGC-CGC-------GGCC-GCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 214928 0.72 0.528567
Target:  5'- gCgAGCGagUGGgGCaCGGUGACGUGGUCa -3'
miRNA:   3'- -GgUUGUg-GCCgCG-GCCGCUGCACCAG- -5'
30187 3' -60 NC_006273.1 + 213864 0.7 0.661209
Target:  5'- gCCAGCGCC--CGCCGGCGAUGUaacagcugGcGUCg -3'
miRNA:   3'- -GGUUGUGGccGCGGCCGCUGCA--------C-CAG- -5'
30187 3' -60 NC_006273.1 + 211186 0.66 0.874327
Target:  5'- -aGACgGCCGGCG-CGGCGG-GUGGg- -3'
miRNA:   3'- ggUUG-UGGCCGCgGCCGCUgCACCag -5'
30187 3' -60 NC_006273.1 + 210722 0.66 0.874327
Target:  5'- gCAGCGCgGGUGCCGGUuucgcugagcgaGAaccGGUCg -3'
miRNA:   3'- gGUUGUGgCCGCGGCCG------------CUgcaCCAG- -5'
30187 3' -60 NC_006273.1 + 209265 0.7 0.651661
Target:  5'- gUCGGgACCGcaGCGcCCGGCGGCGUauccgcaaGGUCu -3'
miRNA:   3'- -GGUUgUGGC--CGC-GGCCGCUGCA--------CCAG- -5'
30187 3' -60 NC_006273.1 + 208927 0.71 0.579115
Target:  5'- aCCAACACCGGUGUgcagcuaagcaauagCGGCGAgGgaucGUCg -3'
miRNA:   3'- -GGUUGUGGCCGCG---------------GCCGCUgCac--CAG- -5'
30187 3' -60 NC_006273.1 + 205980 0.67 0.830405
Target:  5'- gCCuAUACCGGgGCCGucuacgccuGCGACGUGcG-Cg -3'
miRNA:   3'- -GGuUGUGGCCgCGGC---------CGCUGCAC-CaG- -5'
30187 3' -60 NC_006273.1 + 204629 0.68 0.754378
Target:  5'- aCCGcCGCCGGCGCCGuucucgggcaGCGAgGgcacacuaggcGGUCg -3'
miRNA:   3'- -GGUuGUGGCCGCGGC----------CGCUgCa----------CCAG- -5'
30187 3' -60 NC_006273.1 + 203549 0.68 0.771244
Target:  5'- uCCAAguccgugggcaccCACUGGCGCaaacggaauaCGGCuuCGUGGUCu -3'
miRNA:   3'- -GGUU-------------GUGGCCGCG----------GCCGcuGCACCAG- -5'
30187 3' -60 NC_006273.1 + 201449 0.72 0.537819
Target:  5'- uCCGcCACCucacaGCCGGCGACGUGGcCc -3'
miRNA:   3'- -GGUuGUGGccg--CGGCCGCUGCACCaG- -5'
30187 3' -60 NC_006273.1 + 200896 0.67 0.838153
Target:  5'- cUCAACGCCGGCGCUuuccgccgucuGGUGcACGaGG-Cg -3'
miRNA:   3'- -GGUUGUGGCCGCGG-----------CCGC-UGCaCCaG- -5'
30187 3' -60 NC_006273.1 + 200688 0.66 0.874327
Target:  5'- aCCAACACCGGCuucaUGGCucCGaaGGUCc -3'
miRNA:   3'- -GGUUGUGGCCGcg--GCCGcuGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 198974 0.66 0.874327
Target:  5'- gCGACACgGGCaCCGuguacGCGGCGcUGGUg -3'
miRNA:   3'- gGUUGUGgCCGcGGC-----CGCUGC-ACCAg -5'
30187 3' -60 NC_006273.1 + 197275 0.68 0.780833
Target:  5'- --cGCGCUGGCGCUGG-GGCGcGaGUCg -3'
miRNA:   3'- gguUGUGGCCGCGGCCgCUGCaC-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.