miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 188048 0.73 0.510248
Target:  5'- gCgAugACa-GCGCCGGCGGCGcgGGUCu -3'
miRNA:   3'- -GgUugUGgcCGCGGCCGCUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 184644 0.74 0.415038
Target:  5'- -aGACGCCagGGCGUCGGCGACcagaucUGGUCu -3'
miRNA:   3'- ggUUGUGG--CCGCGGCCGCUGc-----ACCAG- -5'
30187 3' -60 NC_006273.1 + 120941 0.74 0.423247
Target:  5'- gCCAugGCGCCGcCGCCGGUGACGcGGg- -3'
miRNA:   3'- -GGU--UGUGGCcGCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 116767 0.74 0.439107
Target:  5'- gCCGGCcucucgcucuccaGCCGGCGCUGcGaCGACGUGGa- -3'
miRNA:   3'- -GGUUG-------------UGGCCGCGGC-C-GCUGCACCag -5'
30187 3' -60 NC_006273.1 + 87966 0.74 0.439951
Target:  5'- cCCGACGCCGGaCGCCGcGCcGACGccacUGGg- -3'
miRNA:   3'- -GGUUGUGGCC-GCGGC-CG-CUGC----ACCag -5'
30187 3' -60 NC_006273.1 + 20364 0.74 0.457025
Target:  5'- cCCAACACCGGCGgaccgcgacCCGGCGguGCG-GGa- -3'
miRNA:   3'- -GGUUGUGGCCGC---------GGCCGC--UGCaCCag -5'
30187 3' -60 NC_006273.1 + 140766 0.73 0.465695
Target:  5'- gUCAGCagGCCGGgucgaugaCGCCGGCGACGaGGUg -3'
miRNA:   3'- -GGUUG--UGGCC--------GCGGCCGCUGCaCCAg -5'
30187 3' -60 NC_006273.1 + 177521 0.73 0.483284
Target:  5'- gCCAGCgaACCGGCGgCGuuGaACGUGGUCc -3'
miRNA:   3'- -GGUUG--UGGCCGCgGCcgC-UGCACCAG- -5'
30187 3' -60 NC_006273.1 + 189316 0.73 0.483284
Target:  5'- gCGGCACCugcGGCGUCGGCGG-GUGGg- -3'
miRNA:   3'- gGUUGUGG---CCGCGGCCGCUgCACCag -5'
30187 3' -60 NC_006273.1 + 185297 0.74 0.415038
Target:  5'- -aAACGUCGG-GCCGGCGugGUGGUg -3'
miRNA:   3'- ggUUGUGGCCgCGGCCGCugCACCAg -5'
30187 3' -60 NC_006273.1 + 971 0.75 0.406928
Target:  5'- -gGGCGCCGGCGCCGGUaACG-GGa- -3'
miRNA:   3'- ggUUGUGGCCGCGGCCGcUGCaCCag -5'
30187 3' -60 NC_006273.1 + 197081 0.75 0.398917
Target:  5'- gCAGCGgCGGCGCCgacGGUGAUGgugGGUCc -3'
miRNA:   3'- gGUUGUgGCCGCGG---CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 148777 0.82 0.153219
Target:  5'- aCCGAgGCCGGCGgCGGCGcCGUGcGUCu -3'
miRNA:   3'- -GGUUgUGGCCGCgGCCGCuGCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 134935 0.79 0.217839
Target:  5'- gCCGACACCGGCGCCGcGUGACGc---- -3'
miRNA:   3'- -GGUUGUGGCCGCGGC-CGCUGCaccag -5'
30187 3' -60 NC_006273.1 + 129385 0.79 0.238632
Target:  5'- uCCu-CGCCGGCGCUGGUcuuGACGUGcGUCa -3'
miRNA:   3'- -GGuuGUGGCCGCGGCCG---CUGCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 30759 0.77 0.278985
Target:  5'- cCCGAgAaCGGCGCCGGCGGCgGUGG-Cg -3'
miRNA:   3'- -GGUUgUgGCCGCGGCCGCUG-CACCaG- -5'
30187 3' -60 NC_006273.1 + 196489 0.77 0.29147
Target:  5'- uUCGGCA-CGGCGCgGGCGAgGUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGgCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 194901 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 73762 0.76 0.345759
Target:  5'- cCCGGCAgCGGCGCCGccaGCGGCGaccaUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGGC---CGCUGC----ACCAg -5'
30187 3' -60 NC_006273.1 + 113497 0.75 0.391009
Target:  5'- uCgGAUGCCGuaGCCGGCGGCG-GGUUg -3'
miRNA:   3'- -GgUUGUGGCcgCGGCCGCUGCaCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.