miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 3' -60 NC_006273.1 + 50328 0.8 0.212889
Target:  5'- aCCAcguCGCCGGCGCCGGUGu--UGGUCg -3'
miRNA:   3'- -GGUu--GUGGCCGCGGCCGCugcACCAG- -5'
30187 3' -60 NC_006273.1 + 93509 0.71 0.603847
Target:  5'- -uGACGCCGcCGCCGGCcuCGUcGGUCa -3'
miRNA:   3'- ggUUGUGGCcGCGGCCGcuGCA-CCAG- -5'
30187 3' -60 NC_006273.1 + 71878 0.71 0.617221
Target:  5'- uUCGACugCGGCGgcaacgggcgcgacaCCGGCGACGgaaccugagGGUa -3'
miRNA:   3'- -GGUUGugGCCGC---------------GGCCGCUGCa--------CCAg -5'
30187 3' -60 NC_006273.1 + 177695 0.66 0.881012
Target:  5'- gCCGACGCUGGCGCU-GCGGC-UGa-- -3'
miRNA:   3'- -GGUUGUGGCCGCGGcCGCUGcACcag -5'
30187 3' -60 NC_006273.1 + 8 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 234839 0.76 0.338592
Target:  5'- uCCcGCACCGGCGgCGGuCGGgGUGuGUCg -3'
miRNA:   3'- -GGuUGUGGCCGCgGCC-GCUgCAC-CAG- -5'
30187 3' -60 NC_006273.1 + 67473 0.75 0.383204
Target:  5'- cCCAACccguccccccGCUGaGCGuuGGCGGCGaUGGUCa -3'
miRNA:   3'- -GGUUG----------UGGC-CGCggCCGCUGC-ACCAG- -5'
30187 3' -60 NC_006273.1 + 2188 0.75 0.398917
Target:  5'- gCAGCGgCGGCGCCgacGGUGAUGgugGGUCc -3'
miRNA:   3'- gGUUGUgGCCGCGG---CCGCUGCa--CCAG- -5'
30187 3' -60 NC_006273.1 + 166944 0.72 0.547125
Target:  5'- aUCAGCGCCuuGGCGUCGG-GG-GUGGUCa -3'
miRNA:   3'- -GGUUGUGG--CCGCGGCCgCUgCACCAG- -5'
30187 3' -60 NC_006273.1 + 1966 0.71 0.594314
Target:  5'- --cGCGgCGGgGCCGGCGACG-GGg- -3'
miRNA:   3'- gguUGUgGCCgCGGCCGCUGCaCCag -5'
30187 3' -60 NC_006273.1 + 164271 0.72 0.565884
Target:  5'- gCGAaACUGGUGCUGGCGGCGccgGGUg -3'
miRNA:   3'- gGUUgUGGCCGCGGCCGCUGCa--CCAg -5'
30187 3' -60 NC_006273.1 + 201449 0.72 0.537819
Target:  5'- uCCGcCACCucacaGCCGGCGACGUGGcCc -3'
miRNA:   3'- -GGUuGUGGccg--CGGCCGCUGCACCaG- -5'
30187 3' -60 NC_006273.1 + 100460 0.79 0.233283
Target:  5'- gCGGCGCCGGUGUCGGCGGauUGGUUc -3'
miRNA:   3'- gGUUGUGGCCGCGGCCGCUgcACCAG- -5'
30187 3' -60 NC_006273.1 + 97352 0.72 0.568713
Target:  5'- gCAGCaACCaGGCGCCGGCGccgccuaGCGUcacugccuucugacaGGUCa -3'
miRNA:   3'- gGUUG-UGG-CCGCGGCCGC-------UGCA---------------CCAG- -5'
30187 3' -60 NC_006273.1 + 30684 0.78 0.272903
Target:  5'- gCCGGC-CgCGGUGCCGGCGGCuaugauccuGUGGUCc -3'
miRNA:   3'- -GGUUGuG-GCCGCGGCCGCUG---------CACCAG- -5'
30187 3' -60 NC_006273.1 + 155438 0.73 0.474449
Target:  5'- aCCGcCGCCGuGC-CCGGCGACGcgGGUUc -3'
miRNA:   3'- -GGUuGUGGC-CGcGGCCGCUGCa-CCAG- -5'
30187 3' -60 NC_006273.1 + 160891 0.71 0.575327
Target:  5'- gCCGGCGCCGGguaaauaaauCGgCGGUGGCGUcGGUg -3'
miRNA:   3'- -GGUUGUGGCC----------GCgGCCGCUGCA-CCAg -5'
30187 3' -60 NC_006273.1 + 183934 0.71 0.613397
Target:  5'- aCAcgGCCGGgGagGGCGACGUGGUa -3'
miRNA:   3'- gGUugUGGCCgCggCCGCUGCACCAg -5'
30187 3' -60 NC_006273.1 + 1596 0.77 0.29147
Target:  5'- uUCGGCA-CGGCGCgGGCGAgGUGGUg -3'
miRNA:   3'- -GGUUGUgGCCGCGgCCGCUgCACCAg -5'
30187 3' -60 NC_006273.1 + 25495 0.76 0.353034
Target:  5'- gCCuucuGCuACgCGGCGCCcGCGACGUGGUUu -3'
miRNA:   3'- -GGu---UG-UG-GCCGCGGcCGCUGCACCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.