miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30187 5' -52.4 NC_006273.1 + 206339 0.66 0.994492
Target:  5'- uCGGCCCGauuUCUUUUuguccaccgacgcgCGaccGCGAUGUCGg -3'
miRNA:   3'- -GCCGGGUgu-AGAAAA--------------GC---CGCUACAGU- -5'
30187 5' -52.4 NC_006273.1 + 162616 0.66 0.993914
Target:  5'- gCGGCUgcaCGCGUUg--UUGGaCGGUGUCAc -3'
miRNA:   3'- -GCCGG---GUGUAGaaaAGCC-GCUACAGU- -5'
30187 5' -52.4 NC_006273.1 + 171159 0.66 0.993914
Target:  5'- gGGCCagguCAUCggcgcuagCGcGCGAUGUCGg -3'
miRNA:   3'- gCCGGgu--GUAGaaaa----GC-CGCUACAGU- -5'
30187 5' -52.4 NC_006273.1 + 116579 0.66 0.993914
Target:  5'- aCGGCCguuguaggaCACGUUg---CGGCGAUG-CAg -3'
miRNA:   3'- -GCCGG---------GUGUAGaaaaGCCGCUACaGU- -5'
30187 5' -52.4 NC_006273.1 + 154889 0.66 0.993914
Target:  5'- gGGCCUGC-UCUUcUCGGCcAUGUa- -3'
miRNA:   3'- gCCGGGUGuAGAAaAGCCGcUACAgu -5'
30187 5' -52.4 NC_006273.1 + 120572 0.66 0.993827
Target:  5'- uGGCCCgggcaagGCGUCUUgccgguggCGGCGAcGUUu -3'
miRNA:   3'- gCCGGG-------UGUAGAAaa------GCCGCUaCAGu -5'
30187 5' -52.4 NC_006273.1 + 61218 0.67 0.989608
Target:  5'- -aGCCCAgCGUCUcgaggCGGCGGUG-CAg -3'
miRNA:   3'- gcCGGGU-GUAGAaaa--GCCGCUACaGU- -5'
30187 5' -52.4 NC_006273.1 + 201257 0.67 0.986709
Target:  5'- gGGCCgGC-UUg--UCGGCGAUuGUCGc -3'
miRNA:   3'- gCCGGgUGuAGaaaAGCCGCUA-CAGU- -5'
30187 5' -52.4 NC_006273.1 + 208550 0.67 0.985044
Target:  5'- uGGCUCacggGCAUUUUggUGGCGAUGUa- -3'
miRNA:   3'- gCCGGG----UGUAGAAaaGCCGCUACAgu -5'
30187 5' -52.4 NC_006273.1 + 24733 0.67 0.985044
Target:  5'- uGGCgCACAUCc---CGGCGcuagGUGUCAc -3'
miRNA:   3'- gCCGgGUGUAGaaaaGCCGC----UACAGU- -5'
30187 5' -52.4 NC_006273.1 + 193176 0.68 0.983224
Target:  5'- -aGCCCACG-CUgcccgUUCGGCGGccGUCGg -3'
miRNA:   3'- gcCGGGUGUaGAa----AAGCCGCUa-CAGU- -5'
30187 5' -52.4 NC_006273.1 + 147517 0.68 0.981242
Target:  5'- gCGGCCCGCucgCUcgggaGGCGAUGg-- -3'
miRNA:   3'- -GCCGGGUGua-GAaaag-CCGCUACagu -5'
30187 5' -52.4 NC_006273.1 + 20207 0.68 0.981242
Target:  5'- uGGCCguCAUCgugaccUCGGUGGUGUg- -3'
miRNA:   3'- gCCGGguGUAGaaa---AGCCGCUACAgu -5'
30187 5' -52.4 NC_006273.1 + 205456 0.68 0.978865
Target:  5'- aGGCCCGCAaagUCUUa--GGCGAggggaauUGUCc -3'
miRNA:   3'- gCCGGGUGU---AGAAaagCCGCU-------ACAGu -5'
30187 5' -52.4 NC_006273.1 + 100447 0.68 0.974245
Target:  5'- gGGCgCGCGUCacg-CGGCGccgGUGUCGg -3'
miRNA:   3'- gCCGgGUGUAGaaaaGCCGC---UACAGU- -5'
30187 5' -52.4 NC_006273.1 + 187216 0.69 0.965521
Target:  5'- gCGGgCUGCGUCgccUUCGGUGAcGUCGg -3'
miRNA:   3'- -GCCgGGUGUAGaa-AAGCCGCUaCAGU- -5'
30187 5' -52.4 NC_006273.1 + 106035 0.69 0.962199
Target:  5'- aGGCCUuacGCAUCUacuaCGGCGAUGa-- -3'
miRNA:   3'- gCCGGG---UGUAGAaaa-GCCGCUACagu -5'
30187 5' -52.4 NC_006273.1 + 79672 0.69 0.962199
Target:  5'- aGGCCCugAcUCU---UGGCGAUgGUCAu -3'
miRNA:   3'- gCCGGGugU-AGAaaaGCCGCUA-CAGU- -5'
30187 5' -52.4 NC_006273.1 + 230711 0.7 0.950918
Target:  5'- aGGCCuuaauacuagcCACAUCUUaccugUCGGCGGccUGUCu -3'
miRNA:   3'- gCCGG-----------GUGUAGAAa----AGCCGCU--ACAGu -5'
30187 5' -52.4 NC_006273.1 + 188912 0.72 0.884898
Target:  5'- gGGCCUggGCGUCac--CGGCGGUGUCc -3'
miRNA:   3'- gCCGGG--UGUAGaaaaGCCGCUACAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.