miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30188 3' -52.2 NC_006273.1 + 93322 0.66 0.997023
Target:  5'- cCGUCGcCGCUggcGGcgcugccgcgaGACGACGUGGa -3'
miRNA:   3'- -GCAGCaGCGAaacCC-----------UUGCUGCACUa -5'
30188 3' -52.2 NC_006273.1 + 101396 0.66 0.995931
Target:  5'- gGUCGUCGUgc-GGGGACGcagggucgGUGAUg -3'
miRNA:   3'- gCAGCAGCGaaaCCCUUGCug------CACUA- -5'
30188 3' -52.2 NC_006273.1 + 102639 0.66 0.995931
Target:  5'- gGUacagGCg--GGGAACGGCGUGAUg -3'
miRNA:   3'- gCAgcagCGaaaCCCUUGCUGCACUA- -5'
30188 3' -52.2 NC_006273.1 + 112450 0.67 0.993699
Target:  5'- gCGuUCGUCGUccccaGGGAcCGGCGUGGc -3'
miRNA:   3'- -GC-AGCAGCGaaa--CCCUuGCUGCACUa -5'
30188 3' -52.2 NC_006273.1 + 142804 0.68 0.984655
Target:  5'- cCGcCGUCGCUggUGGGcACgGGCGUGc- -3'
miRNA:   3'- -GCaGCAGCGAa-ACCCuUG-CUGCACua -5'
30188 3' -52.2 NC_006273.1 + 218184 0.68 0.982808
Target:  5'- uCGUCGUCGCguggcaUGGGcggcggccGACGGCG-GAc -3'
miRNA:   3'- -GCAGCAGCGaa----ACCC--------UUGCUGCaCUa -5'
30188 3' -52.2 NC_006273.1 + 205972 0.68 0.980797
Target:  5'- uCGUCGUCGCcuauaccGGGGccgucuacgccuGCGACGUGc- -3'
miRNA:   3'- -GCAGCAGCGaaa----CCCU------------UGCUGCACua -5'
30188 3' -52.2 NC_006273.1 + 14210 0.68 0.980797
Target:  5'- cCG-CGgCGC-UUGGGAGCGGgGUGAc -3'
miRNA:   3'- -GCaGCaGCGaAACCCUUGCUgCACUa -5'
30188 3' -52.2 NC_006273.1 + 203861 0.68 0.978616
Target:  5'- aGUCGUCGUccucauaGGGGuugcCGGCGUGAg -3'
miRNA:   3'- gCAGCAGCGaaa----CCCUu---GCUGCACUa -5'
30188 3' -52.2 NC_006273.1 + 145630 0.7 0.950187
Target:  5'- gGUCGUgGUggUGGGggUGGCGggGAUu -3'
miRNA:   3'- gCAGCAgCGaaACCCuuGCUGCa-CUA- -5'
30188 3' -52.2 NC_006273.1 + 184952 0.72 0.903656
Target:  5'- -cUCGUCGCUgccgucgUGGGAACGACa---- -3'
miRNA:   3'- gcAGCAGCGAa------ACCCUUGCUGcacua -5'
30188 3' -52.2 NC_006273.1 + 82276 0.72 0.883972
Target:  5'- gCGUCGUCGUacUUGGGcgugggccGCGGCGUGGa -3'
miRNA:   3'- -GCAGCAGCGa-AACCCu-------UGCUGCACUa -5'
30188 3' -52.2 NC_006273.1 + 185826 1.07 0.015723
Target:  5'- uCGUCGUCGCUUUGGGAACGACGUGAUg -3'
miRNA:   3'- -GCAGCAGCGAAACCCUUGCUGCACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.