miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30188 5' -54.1 NC_006273.1 + 158649 0.65 0.988499
Target:  5'- cGGCCUCGUUggugacgcggaugUUGCCggcgcauGCGgGUCGcAGa -3'
miRNA:   3'- aCUGGAGCAG-------------AACGG-------UGCgCAGCuUC- -5'
30188 5' -54.1 NC_006273.1 + 215025 0.66 0.987929
Target:  5'- cGACCgUCGUCUgagcagugugggcgcUGCCGgGC-UCGGAa -3'
miRNA:   3'- aCUGG-AGCAGA---------------ACGGUgCGcAGCUUc -5'
30188 5' -54.1 NC_006273.1 + 115094 0.66 0.987336
Target:  5'- gGAcCCUCGUCggaagcgGCCGCGaucagCGAGGc -3'
miRNA:   3'- aCU-GGAGCAGaa-----CGGUGCgca--GCUUC- -5'
30188 5' -54.1 NC_006273.1 + 45328 0.66 0.985758
Target:  5'- gGugUUCGUCcccCCGC-CGUCGGAGg -3'
miRNA:   3'- aCugGAGCAGaacGGUGcGCAGCUUC- -5'
30188 5' -54.1 NC_006273.1 + 168691 0.66 0.985758
Target:  5'- cGAcCCUCGUUUUGCUGCGUGg----- -3'
miRNA:   3'- aCU-GGAGCAGAACGGUGCGCagcuuc -5'
30188 5' -54.1 NC_006273.1 + 9166 0.66 0.985758
Target:  5'- -cACCUCGUCggacaGCGUGUCGGAa -3'
miRNA:   3'- acUGGAGCAGaacggUGCGCAGCUUc -5'
30188 5' -54.1 NC_006273.1 + 102982 0.66 0.984032
Target:  5'- -cGCCgCGUCgUGCCAacccgGCGUCGGAc -3'
miRNA:   3'- acUGGaGCAGaACGGUg----CGCAGCUUc -5'
30188 5' -54.1 NC_006273.1 + 69262 0.66 0.983852
Target:  5'- cGACCgccugcgUCGUCUaUGCUucGCGCGUCa--- -3'
miRNA:   3'- aCUGG-------AGCAGA-ACGG--UGCGCAGcuuc -5'
30188 5' -54.1 NC_006273.1 + 111148 0.66 0.982153
Target:  5'- aGACaccaagCaUGCCACGCGUCGAc- -3'
miRNA:   3'- aCUGgagca-GaACGGUGCGCAGCUuc -5'
30188 5' -54.1 NC_006273.1 + 135443 0.66 0.982153
Target:  5'- -cGCgCUCGUCU--CCACGC-UCGAGGg -3'
miRNA:   3'- acUG-GAGCAGAacGGUGCGcAGCUUC- -5'
30188 5' -54.1 NC_006273.1 + 198619 0.66 0.980113
Target:  5'- gGGCCUCGgcgugCUcagGCCACcCGcCGGAGc -3'
miRNA:   3'- aCUGGAGCa----GAa--CGGUGcGCaGCUUC- -5'
30188 5' -54.1 NC_006273.1 + 138751 0.67 0.977903
Target:  5'- cGACCaCGUa--GUCGCGCG-CGAAGg -3'
miRNA:   3'- aCUGGaGCAgaaCGGUGCGCaGCUUC- -5'
30188 5' -54.1 NC_006273.1 + 167089 0.67 0.975517
Target:  5'- cGGCCUCGUCgcugagcGCUuuccgggcCGCGUCGGc- -3'
miRNA:   3'- aCUGGAGCAGaa-----CGGu-------GCGCAGCUuc -5'
30188 5' -54.1 NC_006273.1 + 32649 0.67 0.972949
Target:  5'- aUGACCUggcCGUCg-GCguCGCGUCGcAGg -3'
miRNA:   3'- -ACUGGA---GCAGaaCGguGCGCAGCuUC- -5'
30188 5' -54.1 NC_006273.1 + 87855 0.67 0.972949
Target:  5'- -aGCCUCGUCUUcGCCG-GCGUucaCGAGa -3'
miRNA:   3'- acUGGAGCAGAA-CGGUgCGCA---GCUUc -5'
30188 5' -54.1 NC_006273.1 + 162834 0.67 0.972949
Target:  5'- gGGCCUCaUCgcaGCCuuGCGUCGGc- -3'
miRNA:   3'- aCUGGAGcAGaa-CGGugCGCAGCUuc -5'
30188 5' -54.1 NC_006273.1 + 173462 0.68 0.964083
Target:  5'- cGGuCCUCGUCUccGCCGC-CGUCGugcuGGu -3'
miRNA:   3'- aCU-GGAGCAGAa-CGGUGcGCAGCu---UC- -5'
30188 5' -54.1 NC_006273.1 + 233942 0.68 0.960722
Target:  5'- cGGCCUUGUCgc-CCAC-CGUCGGGu -3'
miRNA:   3'- aCUGGAGCAGaacGGUGcGCAGCUUc -5'
30188 5' -54.1 NC_006273.1 + 39049 0.68 0.960722
Target:  5'- cGGCCUUGUCgc-CCAC-CGUCGGGu -3'
miRNA:   3'- aCUGGAGCAGaacGGUGcGCAGCUUc -5'
30188 5' -54.1 NC_006273.1 + 98630 0.68 0.953361
Target:  5'- cGACCUCGUCgcgGUCGUGCGgaUCGGu- -3'
miRNA:   3'- aCUGGAGCAGaa-CGGUGCGC--AGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.