Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30188 | 5' | -54.1 | NC_006273.1 | + | 185865 | 1.08 | 0.008014 |
Target: 5'- aUGACCUCGUCUUGCCACGCGUCGAAGc -3' miRNA: 3'- -ACUGGAGCAGAACGGUGCGCAGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 215025 | 0.66 | 0.987929 |
Target: 5'- cGACCgUCGUCUgagcagugugggcgcUGCCGgGC-UCGGAa -3' miRNA: 3'- aCUGG-AGCAGA---------------ACGGUgCGcAGCUUc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 69262 | 0.66 | 0.983852 |
Target: 5'- cGACCgccugcgUCGUCUaUGCUucGCGCGUCa--- -3' miRNA: 3'- aCUGG-------AGCAGA-ACGG--UGCGCAGcuuc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 135443 | 0.66 | 0.982153 |
Target: 5'- -cGCgCUCGUCU--CCACGC-UCGAGGg -3' miRNA: 3'- acUG-GAGCAGAacGGUGCGcAGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 198619 | 0.66 | 0.980113 |
Target: 5'- gGGCCUCGgcgugCUcagGCCACcCGcCGGAGc -3' miRNA: 3'- aCUGGAGCa----GAa--CGGUGcGCaGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 138751 | 0.67 | 0.977903 |
Target: 5'- cGACCaCGUa--GUCGCGCG-CGAAGg -3' miRNA: 3'- aCUGGaGCAgaaCGGUGCGCaGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 87855 | 0.67 | 0.972949 |
Target: 5'- -aGCCUCGUCUUcGCCG-GCGUucaCGAGa -3' miRNA: 3'- acUGGAGCAGAA-CGGUgCGCA---GCUUc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 32649 | 0.67 | 0.972949 |
Target: 5'- aUGACCUggcCGUCg-GCguCGCGUCGcAGg -3' miRNA: 3'- -ACUGGA---GCAGaaCGguGCGCAGCuUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 233942 | 0.68 | 0.960722 |
Target: 5'- cGGCCUUGUCgc-CCAC-CGUCGGGu -3' miRNA: 3'- aCUGGAGCAGaacGGUGcGCAGCUUc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 35410 | 0.7 | 0.909139 |
Target: 5'- uUGGCCUCGUCggccucgGCCACGUuccaCGAGc -3' miRNA: 3'- -ACUGGAGCAGaa-----CGGUGCGca--GCUUc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 143415 | 0.7 | 0.883592 |
Target: 5'- -cGCCggcgCGgCcUGCCGCGCGUUGGAGa -3' miRNA: 3'- acUGGa---GCaGaACGGUGCGCAGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 93850 | 0.71 | 0.846892 |
Target: 5'- gUGGCCUCGag-UGCgCAUGCGcCGggGa -3' miRNA: 3'- -ACUGGAGCagaACG-GUGCGCaGCuuC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 133396 | 0.78 | 0.495625 |
Target: 5'- aGGCCUUGgaucCUccgccGCCGCGCGUCGAGGa -3' miRNA: 3'- aCUGGAGCa---GAa----CGGUGCGCAGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 162834 | 0.67 | 0.972949 |
Target: 5'- gGGCCUCaUCgcaGCCuuGCGUCGGc- -3' miRNA: 3'- aCUGGAGcAGaa-CGGugCGCAGCUuc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 173462 | 0.68 | 0.964083 |
Target: 5'- cGGuCCUCGUCUccGCCGC-CGUCGugcuGGu -3' miRNA: 3'- aCU-GGAGCAGAa-CGGUGcGCAGCu---UC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 39049 | 0.68 | 0.960722 |
Target: 5'- cGGCCUUGUCgc-CCAC-CGUCGGGu -3' miRNA: 3'- aCUGGAGCAGaacGGUGcGCAGCUUc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 98630 | 0.68 | 0.953361 |
Target: 5'- cGACCUCGUCgcgGUCGUGCGgaUCGGu- -3' miRNA: 3'- aCUGGAGCAGaa-CGGUGCGC--AGCUuc -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 198271 | 0.69 | 0.940669 |
Target: 5'- gGGCCUgCGgcguuaCUUGCgGCGCuUCGAGGg -3' miRNA: 3'- aCUGGA-GCa-----GAACGgUGCGcAGCUUC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 197256 | 0.69 | 0.925935 |
Target: 5'- cGGCCUCG-CcgGCCcgaGCGCGcCGggGa -3' miRNA: 3'- aCUGGAGCaGaaCGG---UGCGCaGCuuC- -5' |
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30188 | 5' | -54.1 | NC_006273.1 | + | 158649 | 0.65 | 0.988499 |
Target: 5'- cGGCCUCGUUggugacgcggaugUUGCCggcgcauGCGgGUCGcAGa -3' miRNA: 3'- aCUGGAGCAG-------------AACGG-------UGCgCAGCuUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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