miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30189 3' -62.1 NC_006273.1 + 114723 0.69 0.57346
Target:  5'- uUugCUGGGGG-CGCCcaUGAUCGCCGu -3'
miRNA:   3'- uGugGGCCCUCgGCGG--ACUAGCGGUc -5'
30189 3' -62.1 NC_006273.1 + 140789 0.7 0.526716
Target:  5'- ---aCCGGGaAGCCGgCggaGGUCGCCGGg -3'
miRNA:   3'- ugugGGCCC-UCGGCgGa--CUAGCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 161641 0.7 0.499357
Target:  5'- cGCugCCGGGccucGGCCGCCgc--CGCCAc -3'
miRNA:   3'- -UGugGGCCC----UCGGCGGacuaGCGGUc -5'
30189 3' -62.1 NC_006273.1 + 62047 0.71 0.481472
Target:  5'- gGCACCgCGGcGGCgGCggacUUGAUCGCCAGu -3'
miRNA:   3'- -UGUGG-GCCcUCGgCG----GACUAGCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 147904 0.71 0.460431
Target:  5'- gGCGCCCGG--GCCGCCUGAggaaggggaggagUGUCAGa -3'
miRNA:   3'- -UGUGGGCCcuCGGCGGACUa------------GCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 145605 0.72 0.404429
Target:  5'- cACGUCCGGuGAGCC-CCUGAaagaugcucugggUCGCCAGg -3'
miRNA:   3'- -UGUGGGCC-CUCGGcGGACU-------------AGCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 46311 0.73 0.366296
Target:  5'- cCGCCCGGGcgcaagaagcGGCCGCCUacgcCGCCGGu -3'
miRNA:   3'- uGUGGGCCC----------UCGGCGGAcua-GCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 214758 0.74 0.296453
Target:  5'- aGCACCgUGGGuGCCGgCgguaUGAUCGCCAGu -3'
miRNA:   3'- -UGUGG-GCCCuCGGCgG----ACUAGCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 189443 0.79 0.155655
Target:  5'- aGCACCCGGGAGCCGgCCUcgcGAcgaagucUCGUCGGa -3'
miRNA:   3'- -UGUGGGCCCUCGGC-GGA---CU-------AGCGGUC- -5'
30189 3' -62.1 NC_006273.1 + 187027 1.08 0.001524
Target:  5'- cACACCCGGGAGCCGCCUGAUCGCCAGg -3'
miRNA:   3'- -UGUGGGCCCUCGGCGGACUAGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.