Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30189 | 3' | -62.1 | NC_006273.1 | + | 177679 | 0.67 | 0.659383 |
Target: 5'- cGCGCCUcucGGAGCCGCC-GA-CGCUGGc -3' miRNA: 3'- -UGUGGGc--CCUCGGCGGaCUaGCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 123127 | 0.67 | 0.659383 |
Target: 5'- cGCACCCGGuccauGAGCaCGuCCUcg-CGCCAGc -3' miRNA: 3'- -UGUGGGCC-----CUCG-GC-GGAcuaGCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 141174 | 0.67 | 0.659383 |
Target: 5'- uGCGCCgGGGGGCgGCggGcaCGCCGGg -3' miRNA: 3'- -UGUGGgCCCUCGgCGgaCuaGCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 159734 | 0.68 | 0.630679 |
Target: 5'- gUACUCGaGGAGCCaGCuCUGGUCGCa-- -3' miRNA: 3'- uGUGGGC-CCUCGG-CG-GACUAGCGguc -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 140789 | 0.7 | 0.526716 |
Target: 5'- ---aCCGGGaAGCCGgCggaGGUCGCCGGg -3' miRNA: 3'- ugugGGCCC-UCGGCgGa--CUAGCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 161641 | 0.7 | 0.499357 |
Target: 5'- cGCugCCGGGccucGGCCGCCgc--CGCCAc -3' miRNA: 3'- -UGugGGCCC----UCGGCGGacuaGCGGUc -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 147904 | 0.71 | 0.460431 |
Target: 5'- gGCGCCCGG--GCCGCCUGAggaaggggaggagUGUCAGa -3' miRNA: 3'- -UGUGGGCCcuCGGCGGACUa------------GCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 46311 | 0.73 | 0.366296 |
Target: 5'- cCGCCCGGGcgcaagaagcGGCCGCCUacgcCGCCGGu -3' miRNA: 3'- uGUGGGCCC----------UCGGCGGAcua-GCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 214758 | 0.74 | 0.296453 |
Target: 5'- aGCACCgUGGGuGCCGgCgguaUGAUCGCCAGu -3' miRNA: 3'- -UGUGG-GCCCuCGGCgG----ACUAGCGGUC- -5' |
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30189 | 3' | -62.1 | NC_006273.1 | + | 35352 | 0.66 | 0.761668 |
Target: 5'- gGCGCCCGGuaggucAGCaUGUCUGAUaccgggCGCCGGg -3' miRNA: 3'- -UGUGGGCCc-----UCG-GCGGACUA------GCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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